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BaseInfo

ncRNA ID	novel_zma_miR8117
Species	Zea mays
Class	miRNA
Genome position	Chr3:130789215-130789263 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	30 - CACUCGGCAAAGAAGCGUCU - 49
Stem-loop(if miRNA)	--  -                 CGC   GC CUUCUUUGUCGAGUGUC   C   || |||||||||||||||||   UG GAAGAAACGGCUCACAG   G UC  C                 UUG
Stem-loop sequence	GCCUUCUUUGUCGAGUGUCCGCCGGUUGACACUCGGCAAAGAAGCGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167423.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*|||||||||||||||| targets:13   AGAGGCUUCUUUGCCGAGUG   32 Target Full Sequence	1.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*|||||||||||||||| targets:13   AGAGGCUUCUUUGCCGAGUG   32 Target Full Sequence	1.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*|||||||||||||||| targets:13   AGAGGCUUCUUUGCCGAGUG   32 Target Full Sequence	1.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
EU962802.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*|||||||||||||||| targets:1096   AGAGGCUUCUUUGCCGAGUG   1115 Target Full Sequence	1.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB170157.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*||*||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUG   56 Target Full Sequence	2.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*||*||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUG   56 Target Full Sequence	2.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||*||*||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUG   56 Target Full Sequence	2.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   =***|||||||||||||||| targets:48   GUUGGCUUCUUUGCCGAGUG   67 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
JB167528.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||=*|*||||||||||||| targets:10   AGAUUCGUCUUUGCCGAGUG   29 Target Full Sequence	3.0	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
HI407067.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||=*|*||||||||||||| targets:10   AGAUUCGUCUUUGCCGAGUG   29 Target Full Sequence	3.0	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||=*|*||||||||||||| targets:10   AGAUUCGUCUUUGCCGAGUG   29 Target Full Sequence	3.0	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:20   UCUGCG-AAGAAACGGCUCAC   1   *||||*-|||||||||||||| targets:2   UGACGGAUUCUUUGCCGAGUG   22 Target Full Sequence	3.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:20   UCUGCG-AAGAAACGGCUCAC   1   *||||*-|||||||||||||| targets:2   UGACGGAUUCUUUGCCGAGUG   22 Target Full Sequence	3.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:20   UCUGCG-AAGAAACGGCUCAC   1   *||||*-|||||||||||||| targets:2   UGACGGAUUCUUUGCCGAGUG   22 Target Full Sequence	3.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
BT067215.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   =***|||||||||||||||| targets:1147   GUUGGCUUCUUUGCCGAGUG   1166 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   =***|||||||||||||||| targets:1284   GUUGGCUUCUUUGCCGAGUG   1303 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   =***|||||||||||||||| targets:1284   GUUGGCUUCUUUGCCGAGUG   1303 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
HI406041.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   *||*|||*|||||||||||| targets:136   CGAAGCUACUUUGCCGAGUG   155 Target Full Sequence	2.5	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget
JB166502.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   *||*|||*|||||||||||| targets:136   CGAAGCUACUUUGCCGAGUG   155 Target Full Sequence	2.5	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238171.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   *||*|||*|||||||||||| targets:136   CGAAGCUACUUUGCCGAGUG   155 Target Full Sequence	2.5	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   *||**||||||||||||||| targets:192   CGAGCCUUCUUUGCCGAGUG   211 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
HI406967.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||**|*||||||||||||| targets:16   AGAGCCAUCUUUGCCGAGUG   35 Target Full Sequence	3.0	Sequence 5092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239097.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||**|*||||||||||||| targets:16   AGAGCCAUCUUUGCCGAGUG   35 Target Full Sequence	3.0	Sequence 5092 from Patent EP2985353	NA	coding protein	psRNATarget
JB167428.1	ncRNA:20   UCUGCGAAGAAACGGCUCAC   1   |||**|*||||||||||||| targets:16   AGAGCCAUCUUUGCCGAGUG   35 Target Full Sequence	3.0	Sequence 5092 from Patent EP2559767	NA	coding protein	psRNATarget