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BaseInfo

ncRNA ID	novel_zma_miR8105
Species	Zea mays
Class	miRNA
Genome position	Chr3:160382315-160382375 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	42 - GCUUGGACAGGAAAUUAGGC - 61
Stem-loop(if miRNA)	--       CA  -    UA  -  C -G   A   GCUUGGA  GG AAAU  GG CA G  UGG C   |||||||  || ||||  || || |  ||| U   CGAAUCU  CC UUUA  CC GU C  ACC A UC       --  A    -C  A  A GA   G
Stem-loop sequence	GCUUGGACAGGAAAUUAGGCACGGUGGACUAGCCAAGCAUGACCCAUUUACCUCUAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ072191.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   ||||||||||||||||=||| targets:54   GCCUAAUUUCCUGUCCGAGC   73 Target Full Sequence	1.5	TSA: Zea mays contig07828, mRNA sequence	NA	coding protein	psRNATarget
EU943720.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   |||||=|||||||||||||| targets:554   GCCUAGUUUCCUGUCCAAGC   573 Target Full Sequence	1.0	Zea mays clone 1681864 mRNA sequence	NA	coding protein	psRNATarget
EU943720.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   ||=||||||=|||||||||| targets:377   GCUUAAUUUUCUGUCCAAGC   396 Target Full Sequence	2.5	Zea mays clone 1681864 mRNA sequence	NA	coding protein	psRNATarget
EU976811.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   |||||=|||||||||||||| targets:910   GCCUAGUUUCCUGUCCAAGC   929 Target Full Sequence	1.0	Zea mays clone 990772 mRNA sequence	NA	coding protein	psRNATarget
EU942142.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   |||||=|||||||||||||| targets:1251   GCCUAGUUUCCUGUCCAAGC   1270 Target Full Sequence	1.0	Zea mays clone 1476731 mRNA sequence	NA	coding protein	psRNATarget
BT069394.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   ||=||||||=|||||||||| targets:484   GCUUAAUUUUCUGUCCAAGC   503 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124O18 mRNA, complete cds	NA	coding protein	psRNATarget
BT069394.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   |||||=||||||||||||*| targets:643   GCCUAGUUUCCUGUCCAAAC   662 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124O18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176752.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   ||=||||||=|||||||||| targets:484   GCUUAAUUUUCUGUCCAAGC   503 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384175 (LOC100384175), mRNA	NA	coding protein	psRNATarget
NM_001176752.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   |||||=||||||||||||*| targets:643   GCCUAGUUUCCUGUCCAAAC   662 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384175 (LOC100384175), mRNA	NA	coding protein	psRNATarget
XM_020547387.1	ncRNA:20   CGGAUUAAAGGACAGGUUCG   1   ||=||||||=|||||||||| targets:4041   GCUUAAUUUUCUGUCCAAGC   4060 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (LOC100193086), transcript variant X1, mRNA	NA	coding protein	psRNATarget