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BaseInfo

ncRNA ID	novel_zma_miR8097
Species	Zea mays
Class	miRNA
Genome position	Chr3:199054847-199054920 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	23
Mature sequence(if miRNA)	52 - CGAGACGAGGAGGACGCGGCGCC - 74
Stem-loop(if miRNA)	--C     G      A   G    CGUUC    -    CA    GAGAC AGGAGG CGC GCGC     GGGC UUGG  G    ||||| |||||| ||| ||||     |||| ||||    CUCUG UCUUCC GUG CGCG     UCUG GACC  C AUC     -      C   A    ----A    C    AA
Stem-loop sequence	CGAGACGAGGAGGACGCGGCGCCGUUCGGGCUUGGCAGCAACCAGCGUCUAGCGCAGUGCCCUUCUGUCUCCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970861.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:887   AGCUCCGCGUCCUCCUCGUCUUG   909 Target Full Sequence	1.5	Zea mays clone 352452 calmodulin binding protein mRNA, complete cds	NA	coding protein	psRNATarget
BT063608.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1273   AGCUCCGCGUCCUCCUCGUCUUG   1295 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0085I09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068828.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1387   AGCUCCGCGUCCUCCUCGUCUUG   1409 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0071E04 mRNA, complete cds	NA	coding protein	psRNATarget
BT062078.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1392   AGCUCCGCGUCCUCCUCGUCUUG   1414 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213B16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157999.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1392   AGCUCCGCGUCCUCCUCGUCUUG   1414 Target Full Sequence	1.5	Zea mays calmodulin binding protein (LOC100285104), mRNA	NA	coding protein	psRNATarget
XM_008674776.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1348   AGCUCCGCGUCCUCCUCGUCUUG   1370 Target Full Sequence	1.5	PREDICTED: Zea mays calmodulin binding protein (LOC100285104), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674775.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1549   AGCUCCGCGUCCUCCUCGUCUUG   1571 Target Full Sequence	1.5	PREDICTED: Zea mays calmodulin binding protein (LOC100285104), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674774.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1564   AGCUCCGCGUCCUCCUCGUCUUG   1586 Target Full Sequence	1.5	PREDICTED: Zea mays calmodulin binding protein (LOC100285104), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674773.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1576   AGCUCCGCGUCCUCCUCGUCUUG   1598 Target Full Sequence	1.5	PREDICTED: Zea mays calmodulin binding protein (LOC100285104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067262.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *||*|||||||||||||||||=| targets:1905   AGCUCCGCGUCCUCCUCGUCUUG   1927 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0371A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT085099.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   |||-|||||||||||||||||** targets:345   GGC-CCGCGUCCUCCUCGUCUAA   366 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0286J23 mRNA, complete cds	NA	coding protein	psRNATarget
BT035764.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   |||-|||||||||||||||||** targets:376   GGC-CCGCGUCCUCCUCGUCUAA   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0082G21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138610.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   |||-|||||||||||||||||** targets:376   GGC-CCGCGUCCUCCUCGUCUAA   397 Target Full Sequence	2.5	Zea mays FIP1 (LOC100193496), mRNA	NA	coding protein	psRNATarget
XM_020542338.1	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   |*|||||||||||||||*||||* targets:368   GCCGCCGCGUCCUCCUCUUCUCC   390 Target Full Sequence	2.5	PREDICTED: Zea mays protein VACUOLELESS1 (LOC103636149), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658504.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   |*|||||||||||||||*||||* targets:376   GCCGCCGCGUCCUCCUCUUCUCC   398 Target Full Sequence	2.5	PREDICTED: Zea mays protein VACUOLELESS1 (LOC103636149), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647649.2	ncRNA:23   CCGCGGCGCAGGAGGAGCAGAGC   1   *|||||*|||||||||||||*|| targets:322   AGCGCCUCGUCCUCCUCGUCGCG   344 Target Full Sequence	2.5	PREDICTED: Zea mays GPI ethanolamine phosphate transferase 1 (LOC103627347), mRNA	NA	coding protein	psRNATarget