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BaseInfo

ncRNA ID	novel_zma_miR8094
Species	Zea mays
Class	miRNA
Genome position	Chr2:238311835-238311884 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	22
Mature sequence(if miRNA)	29 - AGAAGCUCUUUGCCGAGUGUCU - 50
Stem-loop(if miRNA)	--   A        C        UU   AGA GCUCUUUG CGAGUGUC  U   ||| |||||||| ||||||||  U   UCU CGGGAAAC GCUCACAG  U UU   -        A        UU
Stem-loop sequence	AGAAGCUCUUUGCCGAGUGUCUUUUUUUGACACUCGACAAAGGGCUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406962.1	ncRNA:21   CUGUGAGCCGUUUCUC-GAAGA   1   |=||||||||||||||-||||| targets:1   GGCACUCGGCAAAGAGGCUUCU   22 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:21   CUGUGAGCCGUUUCUC-GAAGA   1   |=||||||||||||||-||||| targets:1   GGCACUCGGCAAAGAGGCUUCU   22 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:21   CUGUGAGCCGUUUCUC-GAAGA   1   |=||||||||||||||-||||| targets:1   GGCACUCGGCAAAGAGGCUUCU   22 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:22   UCUGUGAGCCGUUUCUC-GAAGA   1   *|=||||||||||||||-||||| targets:1083   CGGCACUCGGCAAAGAGGCUUCU   1105 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:22   UCUGUGAGCCGUUUCUCGAAGA   1   |*|||||=|*|||||||||||| targets:380   AAACACUUGACAAAGAGCUUCU   401 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:22   UCUGUGAGCCGUUUCUCGAAGA   1   |*|||||=|*|||||||||||| targets:632   AAACACUUGACAAAGAGCUUCU   653 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067215.1	ncRNA:22   UCUGUGAGCCGUUUCUCGAAGA   1   *|=|*||||||||||||*|||| targets:1386   UGGCUCUCGGCAAAGAGGUUCU   1407 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:22   UCUGUGAGCCGUUUCUCGAAGA   1   *|=|*||||||||||||*|||| targets:1523   UGGCUCUCGGCAAAGAGGUUCU   1544 Target Full Sequence	2.5	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:22   UCUGUGAGCCGUUUCUCGAAGA   1   *|=|*||||||||||||*|||| targets:1523   UGGCUCUCGGCAAAGAGGUUCU   1544 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget