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BaseInfo

ncRNA ID novel_zma_miR8093
Species Zea mays
Class miRNA
Genome position Chr2:237532046-237532154 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 25
Mature sequence(if miRNA) 1 - CGGAGUAGCAAGGCACAAGUGAACA - 25
Stem-loop(if miRNA) --C         AG     A   A  -AA  U  -A    CC  CU     ACCA  G
   GGAGUAGCA  GCACA GUG AC   AG GA  AGCU  AC  CAGUU    UC U
   |||||||||  ||||| ||| ||   || ||  ||||  ||  |||||    ||
   CCUCGUCGU  CGUGU CAC UG   UC CU  UUGA  UG  GUUAG    AG U
UAC         CU     -   C  CCC  -  CG    CU  -U     --AC  C
Stem-loop sequence CGGAGUAGCAAGGCACAAGUGAACAAAGUGAAAGCUCCACCUCAGUUACCAUCGUUCGACAGAUUGUGUUCAGUUGCUCCUCCCGUCCACUGUGCUCUGCUGCUCCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ062473.1
ncRNA:25   ACAAGUGAACACGGAACGAUGAGGC   1
  |||||||||||||||||||||||||
targets:349   UGUUCACUUGUGCCUUGCUACUCCG   373

0.0 TSA: Zea mays contig63595, mRNA sequence NA coding protein psRNATarget
AY112017.1
ncRNA:25   ACAAGUGAACACGGAACGAUGAGGC   1
  |||||||||||||||||||||||||
targets:341   UGUUCACUUGUGCCUUGCUACUCCG   365

0.0 Zea mays CL3093_1 mRNA sequence NA coding protein psRNATarget