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BaseInfo

ncRNA ID novel_zma_miR8092
Species Zea mays
Class miRNA
Genome position Chr1:111270685-111270769 [-]
Reference genome RefGen_v4
Source SRR1745812
Length 24
Mature sequence(if miRNA) 1 - AAGAACCGAGGAACCGAACCGAAG - 24
Stem-loop(if miRNA) --       U        -UA     --CUAU         AGU
  UCGGUUC GGUUUCUU   UCUUG      UUCGGUUCU   U
  ||||||| ||||||||   |||||      |||||||||   U
  AGCCAAG CCAAGGAG   AGAAC      AAGCCAAGA   U
GA       -        CCA     AUCUUU         AGU
Stem-loop sequence UCGGUUCUGGUUUCUUUAUCUUGCUAUUUCGGUUCUAGUUUUUGAAGAACCGAAUUUCUACAAGAACCGAGGAACCGAACCGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551716.1
ncRNA:24   GAAGCCAAGCCAAGGAGCCAAGAA   1
  =||=*|||=|||||*|||||||||
targets:2146   UUUUUGUUUGGUUCAUCGGUUCUU   2169

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100384682), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008679479.2
ncRNA:24   GAAGCCAAGCCAAGGAGCCAAGAA   1
  =||=*|||=|||||*|||||||||
targets:2146   UUUUUGUUUGGUUCAUCGGUUCUU   2169

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100384682), transcript variant X1, mRNA NA coding protein psRNATarget