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BaseInfo

ncRNA ID	novel_zma_miR8087
Species	Zea mays
Class	miRNA
Genome position	Chr2:204515137-204515219 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	1 - CCGUCGGCUGCUGCUACGCC - 20
Stem-loop(if miRNA)	--      G         -   ---CAC  AAUCCGCAUCUCCU   CCGUCG CUGCUGCUA CGC      CG              C   |||||| ||||||||| |||      ||   GGCAGC GACGACGGU GCG      CG              G AC      -         A   ACGAAA  GGCACGCGCUGGCC
Stem-loop sequence	CCGUCGGCUGCUGCUACGCCACCGAAUCCGCAUCUCCUCGCCGGUCGCGCACGGGCAAAGCAGCGAUGGCAGCAGCGACGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU946337.1	ncRNA:20   CCGCAUCGUCGUCGGCUGCC   1   |||||=||||||*||||||| targets:460   GGCGUGGCAGCACCCGACGG   479 Target Full Sequence	2.5	Zea mays clone 304848 mRNA sequence	NA	coding protein	psRNATarget
BT035672.1	ncRNA:20   CCGCAUCGUCGUCGGCUGCC   1   |||||=||||||*||||||| targets:460   GGCGUGGCAGCACCCGACGG   479 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0076E02 mRNA, complete cds	NA	coding protein	psRNATarget
EU963332.1	ncRNA:20   CCGCAUCGUCGUCGGCUGCC   1   |||||=||||||*||||||| targets:459   GGCGUGGCAGCACCCGACGG   478 Target Full Sequence	2.5	Zea mays clone 260975 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138538.1	ncRNA:20   CCGCAUCGUCGUCGGCUGCC   1   |||||=||||||*||||||| targets:459   GGCGUGGCAGCACCCGACGG   478 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193415 (LOC100193415), mRNA	NA	coding protein	psRNATarget
BT017847.1	ncRNA:20   CC-GCAUCGUCGUCGGCUGCC   1   ||-||*||||||||||||||| targets:702   GGACGGAGCAGCAGCCGACGG   722 Target Full Sequence	3.0	Zea mays clone EL01N0510F04.c mRNA sequence	NA	coding protein	psRNATarget
AY107917.1	ncRNA:20   CC-GCAUCGUCGUCGGCUGCC   1   ||-||*||||||||||||||| targets:1311   GGACGGAGCAGCAGCCGACGG   1331 Target Full Sequence	3.0	Zea mays PCO071987 mRNA sequence	NA	coding protein	psRNATarget
BT086278.1	ncRNA:20   CC-GCAUCGUCGUCGGCUGCC   1   ||-||*||||||||||||||| targets:1640   GGACGGAGCAGCAGCCGACGG   1660 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0143G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154008.2	ncRNA:20   CC-GCAUCGUCGUCGGCUGCC   1   ||-||*||||||||||||||| targets:1672   GGACGGAGCAGCAGCCGACGG   1692 Target Full Sequence	3.0	Zea mays Acetate/butyrate--CoA ligase AAE7 peroxisomal (IDP708), mRNA	NA	coding protein	psRNATarget
EU955542.1	ncRNA:20   CC-GCAUCGUCGUCGGCUGCC   1   ||-||*||||||||||||||| targets:1673   GGACGGAGCAGCAGCCGACGG   1693 Target Full Sequence	3.0	Zea mays clone 1536110 AMP-binding protein mRNA, complete cds	NA	coding protein	psRNATarget