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BaseInfo

ncRNA ID novel_zma_miR8086
Species Zea mays
Class miRNA
Genome position Chr2:193093577-193093706 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 21
Mature sequence(if miRNA) 110 - CAUUUUGGACAUGGCGGUCCA - 130
Stem-loop(if miRNA) --      AC  A      A   UGGU     -C   GA  U    --A    GG    AAUCGAAGU
  GAUCGC  UG CCGAAG GUC    CUGCU  UGG  GC UUUG   CUCC  UUUG         G
  ||||||  || |||||| |||    |||||  |||  || ||||   ||||  ||||         C
  CUGGCG  AC GGUUUU CAG    GACGA  ACC  CG GAAC   GAGG  ACGG         C
AC      GU  A      A   ----     AA   AA  C    GCG    AA    ACCGAAUGU
Stem-loop sequence GAUCGCACUGACCGAAGAGUCUGGUCUGCUCUGGGAGCUUUUGACUCCGGUUUGAAUCGAAGUGCCUGUAAGCCAGGCAAAGGAGGCGCAAGCGCAACCAAAAGCAGGACAUUUUGGACAUGGCGGUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU962372.1
ncRNA:21   ACCUGGCGGUACAGGUUUUAC   1
  **|||*||||||||||||=||
targets:525   AUGACGGCCAUGUCCAAAGUG   545

2.5 Zea mays clone 242143 mRNA sequence NA coding protein psRNATarget
XM_020547969.1
ncRNA:21   ACCUGGCGGUACAGGUUUUAC   1
  **|||*||||||||||||=||
targets:848   AUGACGGCCAUGUCCAAAGUG   868

2.5 PREDICTED: Zea mays uncharacterized LOC100501783 (LOC100501783), transcript variant X1, mRNA NA coding protein psRNATarget