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BaseInfo

ncRNA ID	novel_zma_miR8083
Species	Zea mays
Class	miRNA
Genome position	Chr1:173446722-173446863 [-]
Reference genome	RefGen_v4
Source	SRR1745812
Length	23
Mature sequence(if miRNA)	120 - CCACUCAUUUUAGAUCUAAUGUC - 142
Stem-loop(if miRNA)	--                           G   -AUUAUU  A     A  UA          C ACUACA   CCACUCAUUUUAGAUCUAAUGUCUCUA UUG       CA UUUAC AA  ACACCUUUCA C      C   ||||||||||||||||||||||||||| |||       || ||||| ||  |||||||||| |      A   GGUGAGUAAAAUUUAGAUUGCAGAGAU AAC       GU AAAUG UU  UGUGGGAGGU G      C GU                           A   AAACCAU  A     A  CC          U CACCAC
Stem-loop sequence	CCACUCAUUUUAGAUCUAAUGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUUCACCACUACACACCACCACGUUGGAGGGUGUCCUUAGUAAAAUGUACCAAACAAAUAGAGACGUUAGAUUUAAAAUGAGUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646350.2	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:1726   GACGUUAGAUCUAAAAUGAGUGG   1748 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA	NA	coding protein	psRNATarget
LQ235335.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:4   GACGUUAGAUCUAAAAUGAGUGG   26 Target Full Sequence	0.0	Sequence 1330 from Patent EP2985353	NA	coding protein	psRNATarget
HI403205.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:4   GACGUUAGAUCUAAAAUGAGUGG   26 Target Full Sequence	0.0	Sequence 1330 from Patent EP2074227	NA	coding protein	psRNATarget
JB163666.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:4   GACGUUAGAUCUAAAAUGAGUGG   26 Target Full Sequence	0.0	Sequence 1330 from Patent EP2559767	NA	coding protein	psRNATarget
JB163879.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 1543 from Patent EP2559767	NA	coding protein	psRNATarget
HI403418.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 1543 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235548.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 1543 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241673.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 7668 from Patent EP2985353	NA	coding protein	psRNATarget
HI409543.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 7668 from Patent EP2074227	NA	coding protein	psRNATarget
JB170004.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:143   GACGUUAGAUCUAAAAUGAGUGG   165 Target Full Sequence	0.0	Sequence 7668 from Patent EP2559767	NA	coding protein	psRNATarget
JB163735.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:132   GACGUUAGAUCUAAAAUGAGUGG   154 Target Full Sequence	0.0	Sequence 1399 from Patent EP2559767	NA	coding protein	psRNATarget
HI403274.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:132   GACGUUAGAUCUAAAAUGAGUGG   154 Target Full Sequence	0.0	Sequence 1399 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235404.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:132   GACGUUAGAUCUAAAAUGAGUGG   154 Target Full Sequence	0.0	Sequence 1399 from Patent EP2985353	NA	coding protein	psRNATarget
JB163827.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1491 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235496.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1491 from Patent EP2985353	NA	coding protein	psRNATarget
JB163691.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1355 from Patent EP2559767	NA	coding protein	psRNATarget
HI403383.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
HI403230.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235360.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1355 from Patent EP2985353	NA	coding protein	psRNATarget
JB163844.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403366.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1491 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
JB163685.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
HI403224.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||| targets:131   GACGUUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	0.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163845.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||=|||||||||||| targets:131   GACGUUAGAUUUAAAAUGAGUGG   153 Target Full Sequence	1.5	Sequence 1509 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235514.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||=|||||||||||| targets:131   GACGUUAGAUUUAAAAUGAGUGG   153 Target Full Sequence	1.5	Sequence 1509 from Patent EP2985353	NA	coding protein	psRNATarget
HI403384.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||=|||||||||||| targets:131   GACGUUAGAUUUAAAAUGAGUGG   153 Target Full Sequence	1.5	Sequence 1509 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||* targets:3255   GACGUUAGAUCUAAAAUGAGUGU   3277 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=||||||||||||||||||* targets:3077   GACGUUAGAUCUAAAAUGAGUGU   3099 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679080.2	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=||||||||||||||||||| targets:2150   AACGUUAGAUCUAAAAUGAGUGG   2172 Target Full Sequence	0.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=||||||||||||||||||| targets:2141   AACGUUAGAUCUAAAAUGAGUGG   2163 Target Full Sequence	0.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018927.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=||||||||||||||||||| targets:1173   AACGUUAGAUCUAAAAUGAGUGG   1195 Target Full Sequence	0.0	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
BT087210.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   ||||||||||=|||||||||||* targets:457   GACAUUAGAUUUAAAAUGAGUGA   479 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT087938.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=||||||||||||||||||| targets:993   AACGUUAGAUCUAAAAUGAGUGG   1015 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT037068.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=||||||||||||||||||| targets:1028   AACGUUAGAUCUAAAAUGAGUGG   1050 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=|||*||||||||||||||| targets:183   GACGUUAAAUCUAAAAUGAGUGG   205 Target Full Sequence	1.0	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
JB163459.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=|||*||||||||||||||| targets:183   GACGUUAAAUCUAAAAUGAGUGG   205 Target Full Sequence	1.0	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
HI402998.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=|||*||||||||||||||| targets:183   GACGUUAAAUCUAAAAUGAGUGG   205 Target Full Sequence	1.0	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
HI403197.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=*|||||||||||||||||| targets:131   GACGAUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	1.0	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235327.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=*|||||||||||||||||| targets:131   GACGAUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	1.0	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget
JB163658.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   |||=*|||||||||||||||||| targets:131   GACGAUAGAUCUAAAAUGAGUGG   153 Target Full Sequence	1.0	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=|||*||||||||||||||| targets:135   AACGUUAUAUCUAAAAUGAGUGG   157 Target Full Sequence	1.0	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
JB163743.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=|||*||||||||||||||| targets:135   AACGUUAUAUCUAAAAUGAGUGG   157 Target Full Sequence	1.0	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
HI403282.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *||=|||*||||||||||||||| targets:135   AACGUUAUAUCUAAAAUGAGUGG   157 Target Full Sequence	1.0	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
EZ075942.1	ncRNA:23   CUGUAAUCUAGAUUUUACUCACC   1   *|==*|*|||||||||||||||| targets:105   AAUGCUUGAUCUAAAAUGAGUGG   127 Target Full Sequence	2.0	TSA: Zea mays contig11579, mRNA sequence	NA	coding protein	psRNATarget