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BaseInfo

ncRNA ID	novel_zma_miR8058
Species	Zea mays
Class	miRNA
Genome position	Chr2:190810394-190810444 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	21
Mature sequence(if miRNA)	31 - AUGGCGGCGGAGACGGCGGCG - 51
Stem-loop(if miRNA)	--AU   G   GA     -    GAU     GGC GCG  GACGG CGGC   U     ||| |||  ||||| ||||     CCG CGC  CUGCC GCCG   G GCUU   A   UG     A    GAG
Stem-loop sequence	AUGGCGGCGGAGACGGCGGCGAUUGGAGGCCGACCGUCGUCGCAGCCUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ068126.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:68   CGCCGCCGUCGUCCGCCGCCAU   89 Target Full Sequence	3.0	TSA: Zea mays contig03761, mRNA sequence	NA	coding protein	psRNATarget
BT063307.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:186   CGCCGCCGUCGUCCGCCGCCAU   207 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0051B12 mRNA, complete cds	NA	coding protein	psRNATarget
BT086054.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:196   CGCCGCCGUCGUCCGCCGCCAU   217 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0108O05 mRNA, complete cds	NA	coding protein	psRNATarget
EU970766.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:221   CGCCGCCGUCGUCCGCCGCCAU   242 Target Full Sequence	3.0	Zea mays clone 350346 AT-hook protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679121.2	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:263   CGCCGCCGUCGUCCGCCGCCAU   284 Target Full Sequence	3.0	PREDICTED: Zea mays AT-hook protein 1 isoform 1 (TIDP2696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT039794.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:269   CGCCGCCGUCGUCCGCCGCCAU   290 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0045K01 mRNA, complete cds	NA	coding protein	psRNATarget
BT055165.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:320   CGCCGCCGUCGUCCGCCGCCAU   341 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0135E09 mRNA, complete cds	NA	coding protein	psRNATarget
BT063927.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:342   CGCCGCCGUCGUCCGCCGCCAU   363 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120L18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066414.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:337   CGCCGCCGUCGUCCGCCGCCAU   358 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0117P04 mRNA, complete cds	NA	coding protein	psRNATarget
EU969711.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:358   CGCCGCCGUCGUCCGCCGCCAU   379 Target Full Sequence	3.0	Zea mays clone 334539 AT-hook protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157691.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:358   CGCCGCCGUCGUCCGCCGCCAU   379 Target Full Sequence	3.0	Zea mays AT-hook protein 1 isoform 1 (TIDP2696), mRNA	NA	coding protein	psRNATarget
XM_008679119.2	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:520   CGCCGCCGUCGUCCGCCGCCAU   541 Target Full Sequence	3.0	PREDICTED: Zea mays AT-hook protein 1 isoform 1 (TIDP2696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060574.1	ncRNA:21   GCGGCGGCAG-AGGCGGCGGUA   1   ||||||||||-||||||||||| targets:629   CGCCGCCGUCGUCCGCCGCCAU   650 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0017J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT038626.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|||||||||||||||||* targets:128   CGUCGCCGUCUCCGCCGCCAG   148 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0298G06 mRNA, complete cds	NA	coding protein	psRNATarget
BT066970.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||||||||||=|* targets:125   CGCCGCCGUCUCCGCCGCUAC   145 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0127H20 mRNA, complete cds	NA	coding protein	psRNATarget
BT040557.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||||||||||=|* targets:111   CGCCGCCGUCUCCGCCGCUAC   131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0100H20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111916.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||||||||||=|* targets:137   CGCCGCCGUCUCCGCCGCUAC   157 Target Full Sequence	2.5	Zea mays adenylosuccinate synthetase (adss1), mRNA	NA	coding protein	psRNATarget
U49388.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||||||||||=|* targets:137   CGCCGCCGUCUCCGCCGCUAC   157 Target Full Sequence	2.5	Zea mays adenylosuccinate synthetase mRNA, complete cds	NA	coding protein	psRNATarget
EU953444.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|||||||||||||||||* targets:356   CGUCGCCGUCUCCGCCGCCAG   376 Target Full Sequence	2.0	Zea mays clone 1412248 aspartic proteinase nepenthesin-2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT041372.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|||||||||||||||||* targets:172   CGUCGCCGUCUCCGCCGCCAG   192 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0248G17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147968.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|||||||||||||||||* targets:172   CGUCGCCGUCUCCGCCGCCAG   192 Target Full Sequence	2.0	Zea mays Aspartyl protease AED1 (LOC100273550), mRNA	NA	coding protein	psRNATarget
XM_008647951.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|||||||||||||||||* targets:572   CGUCGCCGUCUCCGCCGCCAG   592 Target Full Sequence	2.0	PREDICTED: Zea mays aspartyl protease family protein At5g10770 (LOC103627659), mRNA	NA	coding protein	psRNATarget
BT064762.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|*|||||||||||||||| targets:155   CGUCCCCGUCUCCGCCGCCAU   175 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0118G08 mRNA, complete cds	NA	coding protein	psRNATarget
BT037997.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|*|||||||||||||||| targets:163   CGUCCCCGUCUCCGCCGCCAU   183 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001320200.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|*|||||||||||||||| targets:205   CGUCCCCGUCUCCGCCGCCAU   225 Target Full Sequence	2.0	Zea mays uncharacterized LOC100275611 (LOC100275611), mRNA	NA	coding protein	psRNATarget
BT042794.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||=|*|||||||||||||||| targets:205   CGUCCCCGUCUCCGCCGCCAU   225 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0041M16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670826.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   =|||*|||||||||||||||| targets:313   UGCCACCGUCUCCGCCGCCAU   333 Target Full Sequence	1.0	PREDICTED: Zea mays C2H2-type zinc finger family protein (LOC103646103), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670825.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   =|||*|||||||||||||||| targets:326   UGCCACCGUCUCCGCCGCCAU   346 Target Full Sequence	1.0	PREDICTED: Zea mays C2H2-type zinc finger family protein (LOC103646103), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670824.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   =|||*|||||||||||||||| targets:336   UGCCACCGUCUCCGCCGCCAU   356 Target Full Sequence	1.0	PREDICTED: Zea mays C2H2-type zinc finger family protein (LOC103646103), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108712.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:614   CGCCGCCGUCGCCGCCGCCAG   634 Target Full Sequence	2.5	Zea mays PCO102750 mRNA sequence	NA	coding protein	psRNATarget
KJ728415.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||||||||*||* targets:915   CGCCGCCGUCUCCGCCGGCAA   935 Target Full Sequence	2.5	Zea mays clone pUT6720 WRKY transcription factor (WRKY14) mRNA, partial cds	NA	coding protein	psRNATarget
BT063215.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   *|||||||||*|||||||||| targets:726   GGCCGCCGUCGCCGCCGCCAU   746 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0039B23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174876.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   *|||||||||*|||||||||| targets:726   GGCCGCCGUCGCCGCCGCCAU   746 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382115 (LOC100382115), mRNA	NA	coding protein	psRNATarget
BT042141.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:556   CGCCGCCGUCGCCGCCGCCAG   576 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145M11 mRNA, complete cds	NA	coding protein	psRNATarget
AY109686.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||*||||||||||||* targets:940   CGCCGCCAUCUCCGCCGCCAA   960 Target Full Sequence	2.0	Zea mays CL35924_2 mRNA sequence	NA	coding protein	psRNATarget
EU967243.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||*||||||||||||* targets:187   CGCCGCCCUCUCCGCCGCCAA   207 Target Full Sequence	2.0	Zea mays clone 300623 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150822.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||*||||||||||||* targets:187   CGCCGCCCUCUCCGCCGCCAA   207 Target Full Sequence	2.0	Zea mays Dof zinc finger protein DOF1.6 (LOC100277177), mRNA	NA	coding protein	psRNATarget
EU955503.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||||||||*||* targets:1036   CGCCGCCGUCUCCGCCGGCAA   1056 Target Full Sequence	2.5	Zea mays clone 1534812 mRNA sequence	NA	coding protein	psRNATarget
BT039974.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:553   CGCCGCCGUCGCCGCCGCCAG   573 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0055N08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147453.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:553   CGCCGCCGUCGCCGCCGCCAG   573 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273003 (LOC100273003), mRNA	NA	coding protein	psRNATarget
EU971278.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:290   CGCCGCCGUCGCCGCCGCCAC   310 Target Full Sequence	2.5	Zea mays clone 361257 mRNA sequence	NA	coding protein	psRNATarget
BT063267.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:267   CGCCGCCGUCGCCGCCGCCAC   287 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0045F13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663204.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:295   CGCCGCCGUCGCCGCCGCCAC   315 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (LOC100193603), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544886.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:381   CGCCGCCGUCGCCGCCGCCAC   401 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (LOC100193603), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973081.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:368   CGCCGCCGUCGCCGCCGCCAC   388 Target Full Sequence	2.5	Zea mays clone 392931 mRNA sequence	NA	coding protein	psRNATarget
NM_001165818.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||*||||||||||||||* targets:188   CGCCGGCGUCUCCGCCGCCAA   208 Target Full Sequence	2.0	Zea mays UDP-glycosyltransferase 88A1 (LOC100304381), mRNA	NA	coding protein	psRNATarget
BT061006.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||*||||||||||||||* targets:188   CGCCGGCGUCUCCGCCGCCAA   208 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0084D09 mRNA, complete cds	NA	coding protein	psRNATarget
BT043206.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:97   CGCCGCCGUCGCCGCCGCCAC   117 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120O12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672844.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||*||||||||||||* targets:739   CGCCGCCCUCUCCGCCGCCAA   759 Target Full Sequence	2.0	PREDICTED: Zea mays Dof zinc finger protein DOF1.6 (LOC100277177), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672857.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||*||||||||||||* targets:741   CGCCGCCCUCUCCGCCGCCAA   761 Target Full Sequence	2.0	PREDICTED: Zea mays Dof zinc finger protein DOF1.6 (LOC100277177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001138706.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:284   CGCCGCCGUCGCCGCCGCCAC   304 Target Full Sequence	2.5	Zea mays Mitochondrial substrate carrier family protein (LOC100193603), mRNA	NA	coding protein	psRNATarget
BT035915.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:284   CGCCGCCGUCGCCGCCGCCAC   304 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0088C04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054974.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||*||||||||* targets:790   CGCCGCCGUCUACGCCGCCAC   810 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0156D15 mRNA, complete cds	NA	coding protein	psRNATarget
EU955648.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||*||||||||* targets:804   CGCCGCCGUCUACGCCGCCAC   824 Target Full Sequence	2.5	Zea mays clone 1540756 protein kinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154635.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||*||||||||* targets:852   CGCCGCCGUCUACGCCGCCAC   872 Target Full Sequence	2.5	Zea mays protein kinase (LOC100281715), mRNA	NA	coding protein	psRNATarget
EU957630.1	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   |||||||||||*||||||||* targets:852   CGCCGCCGUCUACGCCGCCAC   872 Target Full Sequence	2.5	Zea mays clone 1599676 protein kinase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661186.2	ncRNA:21   GCGGCGGCAGAGGCGGCGGUA   1   ||||||||||*|||||||||* targets:193   CGCCGCCGUCGCCGCCGCCAA   213 Target Full Sequence	2.5	PREDICTED: Zea mays protein MEI2-like 2 (LOC103638194), transcript variant X1, mRNA	NA	coding protein	psRNATarget