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BaseInfo

ncRNA ID novel_zma_miR8030
Species Zea mays
Class miRNA
Genome position Chr1:69511161-69511259 [-]
Reference genome RefGen_v4
Source SRR3385651
Length 23
Mature sequence(if miRNA) 77 - CUAGUGCAUUUAAACACACCCUU - 99
Stem-loop(if miRNA) --                 ---A   UUAAUUUUAAACUGGGAGAUGUAGG
  CUAGUGCAUUUAAACAC    CCC                         C
  |||||||||||||||||    |||
  GAUCAUGUAAGUUUGUG    CUG                         C
GA                 GAGG   GGAUUUCGACUUAAUAUGGUUUGCC
Stem-loop sequence CUAGUGCAUUUAAACACACCCUUAAUUUUAAACUGGGAGAUGUAGGCCCCGUUUGGUAUAAUUCAGCUUUAGGGUCGGAGGUGUUUGAAUGUACUAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061439.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ||||*|||||||=||||||||||
targets:505   AAGGUUGUGUUUGAAUGCACUAG   527

2.5 Zea mays full-length cDNA clone ZM_BFb0146E05 mRNA, complete cds NA coding protein psRNATarget
BT083749.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||||*||||||=||||||||||
targets:1437   AAGGGGGUGUUUGAAUGCACUAG   1459

2.5 Zea mays full-length cDNA clone ZM_BFb0035A22 mRNA, complete cds NA coding protein psRNATarget
EU953408.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||||*||||||=||||||||||
targets:1278   AAGGGGGUGUUUGAAUGCACUAG   1300

2.5 Zea mays clone 1408713 mRNA sequence NA coding protein psRNATarget
NM_001176181.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||||*||||||=||||||||||
targets:3606   AAGGGGGUGUUUGAAUGCACUAG   3628

2.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||||*||||||=||||||||||
targets:3606   AAGGGGGUGUUUGAAUGCACUAG   3628

2.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
BT084681.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |=|||*||||||=||||||||||
targets:333   AGGGGGGUGUUUGAAUGCACUAG   355

2.5 Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds NA coding protein psRNATarget
EZ073132.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:86   UAGGGGGUGUUUGAAUGCACUAG   108

2.5 TSA: Zea mays contig08769, mRNA sequence NA coding protein psRNATarget
LQ235095.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:92   UAGGGGGUGUUUGAAUGCACUAG   114

2.5 Sequence 1090 from Patent EP2985353 NA coding protein psRNATarget
JB163426.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:92   UAGGGGGUGUUUGAAUGCACUAG   114

2.5 Sequence 1090 from Patent EP2559767 NA coding protein psRNATarget
HI402965.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:92   UAGGGGGUGUUUGAAUGCACUAG   114

2.5 Sequence 1090 from Patent EP2074227 NA coding protein psRNATarget
HI408687.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:2   UAGGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6812 from Patent EP2074227 NA coding protein psRNATarget
JB169148.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:2   UAGGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6812 from Patent EP2559767 NA coding protein psRNATarget
LQ240817.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:2   UAGGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6812 from Patent EP2985353 NA coding protein psRNATarget
JB163600.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:8   UAGGGGGUGUUUGAAUGCACUAG   30

2.5 Sequence 1264 from Patent EP2559767 NA coding protein psRNATarget
LQ235269.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:8   UAGGGGGUGUUUGAAUGCACUAG   30

2.5 Sequence 1264 from Patent EP2985353 NA coding protein psRNATarget
HI403139.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:8   UAGGGGGUGUUUGAAUGCACUAG   30

2.5 Sequence 1264 from Patent EP2074227 NA coding protein psRNATarget
EU947773.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*|||||||||||=|||||
targets:265   UAGGGGGUGUUUAAAUGUACUAG   287

2.5 Zea mays clone 358284 mRNA sequence NA coding protein psRNATarget
BT064892.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*|||||||||||=|||||
targets:266   UAGGGGGUGUUUAAAUGUACUAG   288

2.5 Zea mays full-length cDNA clone ZM_BFb0339N24 mRNA, complete cds NA coding protein psRNATarget
XM_008663424.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:932   UAGGGGGUGUUUGAAUGCACUAG   954

2.5 PREDICTED: Zea mays MED7 transcription factor (MED7.2), transcript variant X1, mRNA NA coding protein psRNATarget
BT087743.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:963   UAGGGGGUGUUUGAAUGCACUAG   985

2.5 Zea mays full-length cDNA clone ZM_BFb0181F12 mRNA, complete cds NA coding protein psRNATarget
BT042628.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:1114   UAGGGGGUGUUUGAAUGCACUAG   1136

2.5 Zea mays full-length cDNA clone ZM_BFb0383P13 mRNA, complete cds NA coding protein psRNATarget
NM_001148622.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:1114   UAGGGGGUGUUUGAAUGCACUAG   1136

2.5 Zea mays MED7 transcription factor (MED7.2), mRNA NA coding protein psRNATarget
XM_020542504.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||||*||||||=||||||||||
targets:2337   UAGGGGGUGUUUGAAUGCACUAG   2359

2.5 PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|||*|||||||=||||||||||
targets:1948   UAGGUUGUGUUUGAAUGCACUAG   1970

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
JB170440.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |*|||*||||||=||||||||||
targets:67   AUGGGGGUGUUUGAAUGCACUAG   89

2.5 Sequence 8104 from Patent EP2559767 NA coding protein psRNATarget
HI409979.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |*|||*||||||=||||||||||
targets:67   AUGGGGGUGUUUGAAUGCACUAG   89

2.5 Sequence 8104 from Patent EP2074227 NA coding protein psRNATarget
LQ242109.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |*|||*||||||=||||||||||
targets:67   AUGGGGGUGUUUGAAUGCACUAG   89

2.5 Sequence 8104 from Patent EP2985353 NA coding protein psRNATarget
HI403007.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||*|*||||||=||||||||||
targets:3   AAGAGGGUGUUUGAAUGCACUAG   25

2.5 Sequence 1132 from Patent EP2074227 NA coding protein psRNATarget
JB163468.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||*|*||||||=||||||||||
targets:3   AAGAGGGUGUUUGAAUGCACUAG   25

2.5 Sequence 1132 from Patent EP2559767 NA coding protein psRNATarget
LQ235137.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  |||*|*||||||=||||||||||
targets:3   AAGAGGGUGUUUGAAUGCACUAG   25

2.5 Sequence 1132 from Patent EP2985353 NA coding protein psRNATarget
NM_001175005.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ||*||*||||||=||||||||||
targets:845   AAUGGGGUGUUUGAAUGCACUAG   867

2.5 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
BT063644.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ||*||*||||||=||||||||||
targets:845   AAUGGGGUGUUUGAAUGCACUAG   867

2.5 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
BT063476.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  =||||*||||||*||||||||||
targets:794   GAGGGGGUGUUUCAAUGCACUAG   816

2.5 Zea mays full-length cDNA clone ZM_BFc0067H23 mRNA, complete cds NA coding protein psRNATarget
LQ240971.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:2   UUAGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6966 from Patent EP2985353 NA coding protein psRNATarget
HI408841.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:2   UUAGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6966 from Patent EP2074227 NA coding protein psRNATarget
JB169302.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:2   UUAGGAGUGUUUGAAUGCACUAG   24

2.5 Sequence 6966 from Patent EP2559767 NA coding protein psRNATarget
BT038068.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:581   UUAGGAGUGUUUGAAUGCACUAG   603

2.5 Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds NA coding protein psRNATarget
XM_008678485.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:2820   UUAGGAGUGUUUGAAUGCACUAG   2842

2.5 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008678483.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:3272   UUAGGAGUGUUUGAAUGCACUAG   3294

2.5 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678484.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:3253   UUAGGAGUGUUUGAAUGCACUAG   3275

2.5 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001317389.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:3274   UUAGGAGUGUUUGAAUGCACUAG   3296

2.5 Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA NA coding protein psRNATarget
XM_008678482.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  ***||*||||||=||||||||||
targets:3271   UUAGGAGUGUUUGAAUGCACUAG   3293

2.5 PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA NA coding protein psRNATarget
BT085047.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|**||||||||=|||||||||*
targets:1524   CACUGUGUGUUUGAAUGCACUAU   1546

2.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
LQ239345.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1   UAUGGAGUGUUUAAAAGCACUAG   23

2.5 Sequence 5340 from Patent EP2985353 NA coding protein psRNATarget
HI407215.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1   UAUGGAGUGUUUAAAAGCACUAG   23

2.5 Sequence 5340 from Patent EP2074227 NA coding protein psRNATarget
JB167676.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1   UAUGGAGUGUUUAAAAGCACUAG   23

2.5 Sequence 5340 from Patent EP2559767 NA coding protein psRNATarget
BT083782.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1079   UAUGGAGUGUUUAAAAGCACUAG   1101

2.5 Zea mays full-length cDNA clone ZM_BFb0039K15 mRNA, complete cds NA coding protein psRNATarget
NM_001143457.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1134   UAUGGAGUGUUUAAAAGCACUAG   1156

2.5 Zea mays hypothetical protein (LOC100217088), mRNA NA coding protein psRNATarget
BT037911.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1134   UAUGGAGUGUUUAAAAGCACUAG   1156

2.5 Zea mays full-length cDNA clone ZM_BFb0202I17 mRNA, complete cds NA coding protein psRNATarget
XM_008674069.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1116   UAUGGAGUGUUUAAAAGCACUAG   1138

2.5 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X2, mRNA NA coding protein psRNATarget
BT060604.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1362   UAUGGAGUGUUUAAAAGCACUAG   1384

2.5 Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds NA coding protein psRNATarget
XM_008674068.2
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *|*||*|||||||||*|||||||
targets:1494   UAUGGAGUGUUUAAAAGCACUAG   1516

2.5 PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:23   UUCCCACACAAAUUUACGUGAUC   1
  *||**|*||||||||||||||||
targets:1364   UAGACUCUGUUUAAAUGCACUAG   1386

2.0 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
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