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BaseInfo

ncRNA ID novel_zma_miR8013
Species Zea mays
Class miRNA
Genome position Chr1:252528306-252528360 [-]
Reference genome RefGen_v4
Source SRR3385651
Length 24
Mature sequence(if miRNA) 1 - GAGGAAGUUGAGAAGGCGAGGAGC - 24
Stem-loop(if miRNA) --         C     -  CU    GU
  UCCUUGUCU UCUCA CU  CUCU  C
  ||||||||| ||||| ||  ||||  U
  AGGAGCGGA AGAGU GA  GAGG  G
CG         -     U  AG    GU
Stem-loop sequence UCCUUGUCUCUCUCACUCUCUCUGUCUGUGGGAGGAAGUUGAGAAGGCGAGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949437.1
ncRNA:24   CGAGGAGCGGAAGAGUUGAAGGAG   1
  ||||||||||||||||||||||||
targets:835   GCUCCUCGCCUUCUCAACUUCCUC   858

0.0 Zea mays clone 407756 mRNA sequence NA coding protein psRNATarget
BT062168.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1597   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1627

3.0 Zea mays full-length cDNA clone ZM_BFb0222M06 mRNA, complete cds NA coding protein psRNATarget
NM_001137689.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1725   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1755

3.0 Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), mRNA NA coding protein psRNATarget
BT034452.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1725   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1755

3.0 Zea mays full-length cDNA clone ZM_BFc0170N21 mRNA, complete cds NA coding protein psRNATarget
BT053905.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1760   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1790

3.0 Zea mays full-length cDNA clone ZM_BFc0038H03 mRNA, complete cds NA coding protein psRNATarget
BT063417.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1784   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1814

3.0 Zea mays full-length cDNA clone ZM_BFc0062B03 mRNA, complete cds NA coding protein psRNATarget
BT054331.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1831   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1861

3.0 Zea mays full-length cDNA clone ZM_BFb0337M24 mRNA, complete cds NA coding protein psRNATarget
AY106418.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1839   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1869

3.0 Zea mays PCO154787 mRNA sequence NA coding protein psRNATarget
EU969311.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1802   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1832

3.0 Zea mays clone 328378 mRNA sequence NA coding protein psRNATarget
BT064121.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1833   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1863

3.0 Zea mays full-length cDNA clone ZM_BFc0139C11 mRNA, complete cds NA coding protein psRNATarget
XM_008656071.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1801   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1831

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X8, mRNA NA coding protein psRNATarget
BT064195.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1907   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1937

3.0 Zea mays full-length cDNA clone ZM_BFc0147E15 mRNA, complete cds NA coding protein psRNATarget
BT064008.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1931   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1961

3.0 Zea mays full-length cDNA clone ZM_BFc0130D06 mRNA, complete cds NA coding protein psRNATarget
XM_008656063.1
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1932   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   1962

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008656064.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:1971   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2001

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656069.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2252   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2282

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008656070.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2256   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2286

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008656067.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2261   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2291

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008656065.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2316   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2346

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008656072.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2350   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2380

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008656068.2
ncRNA:24   CGAG------GAG-CGGAAGAGUUGAAGGAG   1
  ||||------|||-||||||||||||||||=
targets:2414   GCUCGCCGUGCUCAGCCUUCUCAACUUCCUU   2444

3.0 PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 8.1 (gpm152), transcript variant X5, mRNA NA coding protein psRNATarget
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