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BaseInfo

ncRNA ID novel_zma_miR8009
Species Zea mays
Class miRNA
Genome position Chr1:248203343-248203390 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 21
Mature sequence(if miRNA) 1 - ACCGAGGCAAGCCUUUCCCCC - 21
Stem-loop(if miRNA) --A        A        - CCU
   CCGAGGCA GCCUUUCC C   C
   |||||||| |||||||| |
   GGUUUCGU CGGAAAGG G   A
CCA        -        U UAA
Stem-loop sequence ACCGAGGCAAGCCUUUCCCCCUCAAAUGUGGAAAGGCUGCUUUGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008657846.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||=|||||||||||||||
targets:2782   GGGGGGAAGGCUUGCCUCGGU   2802

1.0 PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At3g47840 (LOC103635383), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008657848.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||=|||||||||||||||
targets:2782   GGGGGGAAGGCUUGCCUCGGU   2802

1.0 PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At3g47840 (LOC103635383), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657845.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||=|||||||||||||||
targets:2782   GGGGGGAAGGCUUGCCUCGGU   2802

1.0 PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At3g47840 (LOC103635383), transcript variant X1, mRNA NA coding protein psRNATarget
EU947686.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||=||||=||||||||||
targets:1320   GGGGGGAAGGUUUGCCUCGGU   1340

2.5 Zea mays clone 352454 mRNA sequence NA coding protein psRNATarget
XM_020541294.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||=||||=||||||||||
targets:3314   CGGGGGAAGGUUUGCCUCGGU   3334

2.5 PREDICTED: Zea mays uncharacterized LOC109940916 (LOC109940916), mRNA NA coding protein psRNATarget
XM_008649945.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||=||||||*||||||||
targets:29   GGGGGGAAGGCUAGCCUCGGU   49

2.5 PREDICTED: Zea mays putative vacuolar protein sorting-associated protein 13A (LOC100384121), transcript variant X3, mRNA NA coding protein psRNATarget
EU972554.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||*|||||||||||||||
targets:950   UGGGGUAAGGCUUGCCUCGGU   970

1.0 Zea mays clone 383393 small nuclear ribonucleoprotein F mRNA, complete cds NA coding protein psRNATarget
NM_001158394.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||*|||||||||||||||
targets:950   UGGGGUAAGGCUUGCCUCGGU   970

1.0 Zea mays small nuclear ribonucleoprotein F (LOC100285502), mRNA NA coding protein psRNATarget
BT068831.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||||||||||||*|||||
targets:986   UGGGGAAAGGCUUGCAUCGGU   1006

1.5 Zea mays full-length cDNA clone ZM_BFc0078C05 mRNA, complete cds NA coding protein psRNATarget
NM_001138023.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||||||||||*||||||*
targets:1525   GGGGGAAAGGCUUUCCUCGGC   1545

2.5 Zea mays E3 SUMO-protein ligase MMS21 (cl49722_1), transcript variant 2, mRNA NA coding protein psRNATarget
BT034925.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |||||||||||||*||||||*
targets:1525   GGGGGAAAGGCUUUCCUCGGC   1545

2.5 Zea mays full-length cDNA clone ZM_BFb0028J21 mRNA, complete cds NA coding protein psRNATarget
XM_008670403.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||*|||||||||||||||
targets:863   AGGGGUAAGGCUUGCCUCGGU   883

1.0 PREDICTED: Zea mays methyl binding domain111 (pco097059a), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543433.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||||||*|||||||||||
targets:205   AGGGGAAAGACUUGCCUCGGU   225

1.5 PREDICTED: Zea mays bromodomain and WD repeat-containing protein 3 (LOC103634840), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008657427.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *||||||||*|||||||||||
targets:306   AGGGGAAAGACUUGCCUCGGU   326

1.5 PREDICTED: Zea mays bromodomain and WD repeat-containing protein 3 (LOC103634840), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020540803.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *|*||=|||||||||||||||
targets:60   UGUGGGAAGGCUUGCCUCGGU   80

2.0 PREDICTED: Zea mays uncharacterized LOC103632633 (LOC103632633), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020540798.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  *|*||=|||||||||||||||
targets:67   UGUGGGAAGGCUUGCCUCGGU   87

2.0 PREDICTED: Zea mays uncharacterized LOC103632633 (LOC103632633), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008679065.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  ||||*||||*|||||||||||
targets:605   GGGGUAAAGACUUGCCUCGGU   625

2.5 PREDICTED: Zea mays uncharacterized LOC100283256 (IDP851), transcript variant X1, mRNA NA coding protein psRNATarget
EZ098155.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||=|||||*|||||||||
targets:89   CUGGGGAAGGCCUGCCUCGGU   109

2.5 TSA: Zea mays contig33810, mRNA sequence NA coding protein psRNATarget
EU951333.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||=|||||*|||||||||
targets:691   CUGGGGAAGGCCUGCCUCGGU   711

2.5 Zea mays clone 695716 mRNA sequence NA coding protein psRNATarget
XM_008654837.2
ncRNA:21   CCCCCU-UUCCGAACGGAGCCA   1
  ***|||-|||||||||||||||
targets:805   ACAGGACAAGGCUUGCCUCGGU   826

3.0 PREDICTED: Zea mays enoyl-CoA hydratase 2, peroxisomal (LOC103633156), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001196258.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||*|||||||||=|||||
targets:1015   CAGGGUAAGGCUUGCUUCGGU   1035

2.5 Zea mays Glutamine-dependent NAD(+) synthetase (LOC100501566), mRNA NA coding protein psRNATarget
BT085647.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||*|||||||||=|||||
targets:1015   CAGGGUAAGGCUUGCUUCGGU   1035

2.5 Zea mays full-length cDNA clone ZM_BFc0043A14 mRNA, complete cds NA coding protein psRNATarget
XM_008677856.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||=|||||*|||||||||
targets:3548   CUGGGGAAGGCCUGCCUCGGU   3568

2.5 PREDICTED: Zea mays XS domain protein (LOC103652225), mRNA NA coding protein psRNATarget
JB170355.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 8019 from Patent EP2559767 NA coding protein psRNATarget
HI408596.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 6721 from Patent EP2074227 NA coding protein psRNATarget
JB169057.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 6721 from Patent EP2559767 NA coding protein psRNATarget
LQ240726.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 6721 from Patent EP2985353 NA coding protein psRNATarget
HI409894.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 8019 from Patent EP2074227 NA coding protein psRNATarget
LQ242024.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:34   GCGUGGGAGGCUUGCCUCGGU   54

3.0 Sequence 8019 from Patent EP2985353 NA coding protein psRNATarget
XM_008646473.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|||=|||||||||||*|||
targets:2138   CAGGGGAAGGCUUGCCUAGGU   2158

2.5 PREDICTED: Zea mays fringe-related protein (LOC103626099), transcript variant X1, mRNA NA coding protein psRNATarget
BT060688.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1838   GCGUGGGAGGCUUGCCUCGGU   1858

3.0 Zea mays full-length cDNA clone ZM_BFb0034G21 mRNA, complete cds NA coding protein psRNATarget
NM_001143078.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1914   GCGUGGGAGGCUUGCCUCGGU   1934

3.0 Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), mRNA NA coding protein psRNATarget
BT037148.1
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1914   GCGUGGGAGGCUUGCCUCGGU   1934

3.0 Zea mays full-length cDNA clone ZM_BFb0156J03 mRNA, complete cds NA coding protein psRNATarget
XM_008674024.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1935   GCGUGGGAGGCUUGCCUCGGU   1955

3.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674023.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1935   GCGUGGGAGGCUUGCCUCGGU   1955

3.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674025.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1920   GCGUGGGAGGCUUGCCUCGGU   1940

3.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008674021.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  |*|*|==||||||||||||||
targets:1935   GCGUGGGAGGCUUGCCUCGGU   1955

3.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671762.2
ncRNA:21   CCCCCUUUCCGAACGGAGCCA   1
  **|*|==||||||||||||||
targets:2545   CAGUGGGAGGCUUGCCUCGGU   2565

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g26782, mitochondrial (LOC103647190), mRNA NA coding protein psRNATarget
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