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BaseInfo

ncRNA ID novel_zma_miR8002
Species Zea mays
Class miRNA
Genome position Chr1:99945550-99945593 [+]
Reference genome RefGen_v4
Source SRR3385575;SRR3385651;SRR3385660
Length 22
Mature sequence(if miRNA) 1 - CGUGCUCGUGCGCUACUCUCCU - 22
Stem-loop(if miRNA) --       G     UA U   
  CGUGCUC UGCGC  C CUCC
  ||||||| |||||  | |||U
  GCACGAG GCGCG  G GAGC
GG       -     GC C   
Stem-loop sequence CGUGCUCGUGCGCUACUCUCCUCGAGCGCGGCGCGGAGCACGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001138032.1
ncRNA:22   UCCUCUCAUCGCGUGCUCGUGC   1
  **|=*|||=|||||||||||||
targets:1401   CUGGCAGUGGCGCACGAGCACG   1422

3.0 Zea mays Protein NRT1/ PTR FAMILY 5.2 (LOC100192842), mRNA NA coding protein psRNATarget
BT034936.1
ncRNA:22   UCCUCUCAUCGCGUGCUCGUGC   1
  **|=*|||=|||||||||||||
targets:1401   CUGGCAGUGGCGCACGAGCACG   1422

3.0 Zea mays full-length cDNA clone ZM_BFb0029C01 mRNA, complete cds NA coding protein psRNATarget