Search result

BaseInfo

ncRNA ID	novel_zma_miR7988
Species	Zea mays
Class	miRNA
Genome position	Chr9:16474350-16474452 [-]
Reference genome	RefGen_v4
Source	SRR3385575
Length	21
Mature sequence(if miRNA)	1 - UCAAUCCACCCCUAUCCGAAC - 21
Stem-loop(if miRNA)	--    UUU A                        --------------AA          UCGG   G GGUGGAUUGAGGGGGAUUGGAGGG                AGGGGAUU   ||||   | ||||||||||||||||||||||||                |||||||A   AGCC   C CCACCUAACUCUCCCUAACCUCCC                UCCUCUAA CA    UAU C                        CCACUUAAACAUAUCC
Stem-loop sequence	UCGGUUUGAGGUGGAUUGAGGGGGAUUGGAGGGAAAGGGGAUUAAAUCUCCUCCUAUACAAAUUCACCCCCUCCAAUCCCUCUCAAUCCACCCCUAUCCGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941172.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*|||||||||||||| targets:40   GUUCGGUUAGGGGUGGAUUGA   60 Target Full Sequence	1.0	Zea mays clone 1360935 mRNA sequence	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*|||||||||||||| targets:112   GUUCGGUUAGGGGUGGAUUGA   132 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
JB167599.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*||||||*||||||| targets:20   GUUCGGUUAGGGGGGGAUUGA   40 Target Full Sequence	2.5	Sequence 5263 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239268.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*||||||*||||||| targets:20   GUUCGGUUAGGGGGGGAUUGA   40 Target Full Sequence	2.5	Sequence 5263 from Patent EP2985353	NA	coding protein	psRNATarget
HI407138.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*||||||*||||||| targets:20   GUUCGGUUAGGGGGGGAUUGA   40 Target Full Sequence	2.5	Sequence 5263 from Patent EP2074227	NA	coding protein	psRNATarget
BT042029.1	ncRNA:21   CAAGCCUAUCCCCACCUAACU   1   ||||||*||||*||||||||| targets:178   GUUCGGUUAGGAGUGGAUUGA   198 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds	NA	coding protein	psRNATarget