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BaseInfo

ncRNA ID novel_zma_miR7973
Species Zea mays
Class miRNA
Genome position Chr8:161248155-161248230 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 19
Mature sequence(if miRNA) 58 - UUUGUUUCCUGCUUACAUA - 76
Stem-loop(if miRNA) --         -UG       A  C  GCACACAU    U
  UUUGUUUCC   CUUACAU CA AC        UGUC C
  |||||||||   ||||||| || ||        |||| U
  AAAUAAAGG   GAAUGUA GU UG        AUAG C
UG         UAA       A  -  ---ACUAC    U
Stem-loop sequence UUUGUUUCCUGCUUACAUACACACGCACACAUUGUCUCUCUGAUACAUCAGUUGAAUGUAAGAAUGGAAAUAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU967171.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:395   UAUGUGAGAAGGAAACAAA   413

2.5 Zea mays clone 299991 mRNA sequence NA coding protein psRNATarget
XM_020553085.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:434   UAUGUGAGAAGGAAACAAA   452

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020553084.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:433   UAUGUGAGAAGGAAACAAA   451

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020553083.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:456   UAUGUGAGAAGGAAACAAA   474

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020553082.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:455   UAUGUGAGAAGGAAACAAA   473

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008682997.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:455   UAUGUGAGAAGGAAACAAA   473

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008682996.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:456   UAUGUGAGAAGGAAACAAA   474

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008682995.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:456   UAUGUGAGAAGGAAACAAA   474

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020546863.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:404   UAUGUGAGAAGGAAACAAA   422

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020546862.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:404   UAUGUGAGAAGGAAACAAA   422

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546861.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:425   UAUGUGAGAAGGAAACAAA   443

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546860.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:425   UAUGUGAGAAGGAAACAAA   443

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682994.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:433   UAUGUGAGAAGGAAACAAA   451

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008682993.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:434   UAUGUGAGAAGGAAACAAA   452

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008682992.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:456   UAUGUGAGAAGGAAACAAA   474

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682991.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:455   UAUGUGAGAAGGAAACAAA   473

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682990.2
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:456   UAUGUGAGAAGGAAACAAA   474

2.5 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546858.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:425   UAUGUGAGAAGGAAACAAA   443

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546859.1
ncRNA:19   AUACAUUCGUCCUUUGUUU   1
  |||||=||*||||||||||
targets:433   UAUGUGAGAAGGAAACAAA   451

2.5 PREDICTED: Zea mays CCR4-NOT transcription complex subunit 3 (LOC103643788), transcript variant X2, mRNA NA coding protein psRNATarget
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