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BaseInfo

ncRNA ID novel_zma_miR7968
Species Zea mays
Class miRNA
Genome position Chr8:112268304-112268345 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 20
Mature sequence(if miRNA) 1 - UCUGGGAUGUAGUCUCGACU - 20
Stem-loop(if miRNA) --U    G  G         C
   CUGG AU UAGUCUCGA U
   |||| || |||||||||
   GACC UA GUCGGAGCU U
AAU    G  G         G
Stem-loop sequence UCUGGGAUGUAGUCUCGACUUGUCGAGGCUGGAUGCCAGUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
U14597.1
ncRNA:20   UCAGCUCUGAUGUAGGGUCU   1
  *|||*|||||||||=|||||
targets:488   UGUCAAGACUACAUUCCAGA   507

2.5 Zea mays mudrA mRNA, complete cds NA coding protein psRNATarget
XM_008657690.2
ncRNA:20   UCAGCUCUGAUGUAGGGUCU   1
  *|||*|||||||||=|||||
targets:1797   UGUCAAGACUACAUUCCAGA   1816

2.5 PREDICTED: Zea mays uncharacterized LOC103635166 (LOC103635166), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539636.1
ncRNA:20   UCAGCUCUGAUGUAGGGUCU   1
  *|||*|||||||||=|||||
targets:708   UGUCAAGACUACAUUCCAGA   727

2.5 PREDICTED: Zea mays uncharacterized LOC103630667 (LOC103630667), mRNA NA coding protein psRNATarget
XM_008657689.2
ncRNA:20   UCAGCUCUGAUGUAGGGUCU   1
  *|||*|||||||||=|||||
targets:1937   UGUCAAGACUACAUUCCAGA   1956

2.5 PREDICTED: Zea mays uncharacterized LOC103635166 (LOC103635166), transcript variant X1, mRNA NA coding protein psRNATarget