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BaseInfo

ncRNA ID	novel_zma_miR7965
Species	Zea mays
Class	miRNA
Genome position	Chr8:64077203-64077251 [+]
Reference genome	RefGen_v4
Source	SRR3385575
Length	19
Mature sequence(if miRNA)	31 - UACACCACAAUCCACCUCA - 49
Stem-loop(if miRNA)	--         AG      AAUUA   AGGUGGAUU  GGUGUA     G   |||||||||  ||||||     U   UCCACCUAA  CCACAU     U AC         CA      ACAAU
Stem-loop sequence	AGGUGGAUUAGGGUGUAAAUUAGUUUAACAUACACCACAAUCCACCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108049.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||||| targets:230   UGAGGUGGAUUGUGGUGUA   248 Target Full Sequence	0.0	TSA: Zea mays contig43707, mRNA sequence	NA	coding protein	psRNATarget
BT066687.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||||| targets:837   UGAGGUGGAUUGUGGUGUA   855 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175915.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||||| targets:837   UGAGGUGGAUUGUGGUGUA   855 Target Full Sequence	0.0	Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA	NA	coding protein	psRNATarget
EU962825.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||||| targets:921   UGAGGUGGAUUGUGGUGUA   939 Target Full Sequence	0.0	Zea mays clone 245793 mRNA sequence	NA	coding protein	psRNATarget
AY103846.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||||| targets:941   UGAGGUGGAUUGUGGUGUA   959 Target Full Sequence	0.0	Zea mays PCO130752 mRNA sequence	NA	coding protein	psRNATarget
JB166704.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4368 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238489.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4484 from Patent EP2985353	NA	coding protein	psRNATarget
HI406243.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4368 from Patent EP2074227	NA	coding protein	psRNATarget
HI406359.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4484 from Patent EP2074227	NA	coding protein	psRNATarget
JB166820.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4484 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238373.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:12   UGAGGUGGAUUGAGGUGUA   30 Target Full Sequence	1.5	Sequence 4368 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||*||||||| targets:28   UGAGGUGGAUUAUGGUGUA   46 Target Full Sequence	1.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||*||||||| targets:28   UGAGGUGGAUUAUGGUGUA   46 Target Full Sequence	1.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||*||||||| targets:28   UGAGGUGGAUUAUGGUGUA   46 Target Full Sequence	1.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||||*||||| targets:28   UGAGGUGGAUUGUAGUGUA   46 Target Full Sequence	1.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
JB163398.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||*|| targets:28   UGAGGUGGAUUGUGGUAUA   46 Target Full Sequence	1.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI403066.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||||*||||| targets:28   UGAGGUGGAUUGUAGUGUA   46 Target Full Sequence	1.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||*|| targets:28   UGAGGUGGAUUGUGGUAUA   46 Target Full Sequence	1.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
HI402937.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||||||*|| targets:28   UGAGGUGGAUUGUGGUAUA   46 Target Full Sequence	1.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
JB163527.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||||*||||| targets:28   UGAGGUGGAUUGUAGUGUA   46 Target Full Sequence	1.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
HI403229.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||*||||||||||| targets:29   UGAGGUGAAUUGUGGUGUA   47 Target Full Sequence	1.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||||||||*||||| targets:20   UGAGGUGGAUUGUUGUGUA   38 Target Full Sequence	1.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
JB163690.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||*||||||||||| targets:29   UGAGGUGAAUUGUGGUGUA   47 Target Full Sequence	1.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
JB163723.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
JB163724.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||||*||||||||||| targets:29   UGAGGUGAAUUGUGGUGUA   47 Target Full Sequence	1.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403262.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
HI403263.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:29   UGAGGUGGAUUGAGGUGUA   47 Target Full Sequence	1.5	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:43   UGAGGUGGAUUGAGGUGUA   61 Target Full Sequence	1.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
HI407245.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:43   UGAGGUGGAUUGAGGUGUA   61 Target Full Sequence	1.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
JB167706.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:43   UGAGGUGGAUUGAGGUGUA   61 Target Full Sequence	1.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
EZ063549.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||||||||||*|||||| targets:115   UGAGGUGGAUUGAGGUGUA   133 Target Full Sequence	1.5	TSA: Zea mays contig64671, mRNA sequence	NA	coding protein	psRNATarget
JB163584.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||*|||||||*|||||| targets:28   UGAGAUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1248 from Patent EP2559767	NA	coding protein	psRNATarget
HI403123.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||*|||||||*|||||| targets:28   UGAGAUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1248 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235253.1	ncRNA:19   ACUCCACCUAACACCACAU   1   ||||*|||||||*|||||| targets:28   UGAGAUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1248 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235268.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:28   UGAUGUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1263 from Patent EP2985353	NA	coding protein	psRNATarget
HI403138.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:28   UGAUGUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1263 from Patent EP2074227	NA	coding protein	psRNATarget
JB163599.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:28   UGAUGUGGAUUGGGGUGUA   46 Target Full Sequence	2.5	Sequence 1263 from Patent EP2559767	NA	coding protein	psRNATarget
JB163822.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||*||||||*|||||| targets:29   UGAGGCGGAUUGGGGUGUA   47 Target Full Sequence	2.5	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
HI403361.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||*||||||*|||||| targets:29   UGAGGCGGAUUGGGGUGUA   47 Target Full Sequence	2.5	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||||*||||||*|||||| targets:29   UGAGGCGGAUUGGGGUGUA   47 Target Full Sequence	2.5	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
JB166594.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:14   UGAAGUGGAUUGAGGUGUA   32 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:14   UGAAGUGGAUUGAGGUGUA   32 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:14   UGAAGUGGAUUGAGGUGUA   32 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
EU960447.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:1144   UGAAGUGGAUUGAGGUGUA   1162 Target Full Sequence	2.5	Zea mays clone 224969 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150023.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:1144   UGAAGUGGAUUGAGGUGUA   1162 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA	NA	coding protein	psRNATarget
BT066084.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |||*||||||||*|||||| targets:1165   UGAAGUGGAUUGAGGUGUA   1183 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0286M14 mRNA, complete cds	NA	coding protein	psRNATarget
BT034494.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |*||||||||||*|||||| targets:1612   UAAGGUGGAUUGGGGUGUA   1630 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0173M10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137719.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |*||||||||||*|||||| targets:1612   UAAGGUGGAUUGGGGUGUA   1630 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192499 (LOC100192499), mRNA	NA	coding protein	psRNATarget
BT065101.1	ncRNA:19   ACUCCACCUAACACCACAU   1   |*||||||||||*|||||| targets:1636   UAAGGUGGAUUGGGGUGUA   1654 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059J08 mRNA, complete cds	NA	coding protein	psRNATarget