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BaseInfo

ncRNA ID novel_zma_miR7964
Species Zea mays
Class miRNA
Genome position Chr8:62381471-62381586 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 20
Mature sequence(if miRNA) 1 - GUUCGUUUGUGCUGGAUUGA - 20
Stem-loop(if miRNA) --           CU      AUGA   -     G   UCUAA    A   UU  UCU     A
  GUUCGUUUGUG  GGAUUG    AUC GGAAU GUU     ACGG UUG  UC   AAUUU U
  |||||||||||  ||||||    ||| ||||| |||     |||| |||  ||   |||||
  CAAGCAAACAC  UCUAAC    UGG CUUUA CAA     UGUC GAU  AG   UUAAA A
AA           AG      ---G   A     G   -----    -   -U  -UU     U
Stem-loop sequence GUUCGUUUGUGCUGGAUUGAUGAAUCGGAAUGGUUUCUAAACGGAUUGUUUCUCUAAUUUAUAUAAAUUUUGAUUAGCUGUAACGAUUUCAGGUGCAAUCUGACACAAACGAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405935.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  |||||||=||||||||||||
targets:106   UCAAUCCGGCACAAACGAAC   125

1.5 Sequence 4060 from Patent EP2074227 NA coding protein psRNATarget
LQ238065.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  |||||||=||||||||||||
targets:106   UCAAUCCGGCACAAACGAAC   125

1.5 Sequence 4060 from Patent EP2985353 NA coding protein psRNATarget
JB166396.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  |||||||=||||||||||||
targets:106   UCAAUCCGGCACAAACGAAC   125

1.5 Sequence 4060 from Patent EP2559767 NA coding protein psRNATarget
EZ516643.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  |||||||=||||||||||||
targets:236   UCAAUCCGGCACAAACGAAC   255

1.5 TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence NA coding protein psRNATarget
JB166398.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:103   CCAAUCCGGCACAAACGAAC   122

1.5 Sequence 4062 from Patent EP2559767 NA coding protein psRNATarget
HI405937.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:103   CCAAUCCGGCACAAACGAAC   122

1.5 Sequence 4062 from Patent EP2074227 NA coding protein psRNATarget
LQ238067.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:103   CCAAUCCGGCACAAACGAAC   122

1.5 Sequence 4062 from Patent EP2985353 NA coding protein psRNATarget
LQ238001.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:21   CCAAUCCGGCACAAACGAAC   40

1.5 Sequence 3996 from Patent EP2985353 NA coding protein psRNATarget
JB166332.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:21   CCAAUCCGGCACAAACGAAC   40

1.5 Sequence 3996 from Patent EP2559767 NA coding protein psRNATarget
HI405871.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:21   CCAAUCCGGCACAAACGAAC   40

1.5 Sequence 3996 from Patent EP2074227 NA coding protein psRNATarget
EU941248.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:215   CCAAUCCGGCACAAACGAAC   234

1.5 Zea mays clone 1431203 mRNA sequence NA coding protein psRNATarget
EU974791.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:571   CCAAUCCGGCACAAACGAAC   590

1.5 Zea mays clone 458239 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU975407.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:570   CCAAUCCGGCACAAACGAAC   589

1.5 Zea mays clone 489701 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT035367.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:1316   GCAAUCCGGCACAAACGAAC   1335

1.5 Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds NA coding protein psRNATarget
NM_001138328.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:1316   GCAAUCCGGCACAAACGAAC   1335

1.5 Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA NA coding protein psRNATarget
EU972216.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:1334   GCAAUCCGGCACAAACGAAC   1353

1.5 Zea mays clone 377576 mRNA sequence NA coding protein psRNATarget
XM_008654752.2
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:2772   CCAAUCCGGCACAAACGAAC   2791

1.5 PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA NA coding protein psRNATarget
NM_001175834.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:953   CCAAUCCGGCACAAACGAAC   972

1.5 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
BT066445.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:953   CCAAUCCGGCACAAACGAAC   972

1.5 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
XM_020540976.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||=||||||||||||
targets:4513   CCAAUCCGGCACAAACGAAC   4532

1.5 PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA NA coding protein psRNATarget
HI407339.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *=|||||=||||||||||||
targets:128   CUAAUCCGGCACAAACGAAC   147

2.5 Sequence 5464 from Patent EP2074227 NA coding protein psRNATarget
JB167800.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *=|||||=||||||||||||
targets:128   CUAAUCCGGCACAAACGAAC   147

2.5 Sequence 5464 from Patent EP2559767 NA coding protein psRNATarget
LQ239469.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *=|||||=||||||||||||
targets:128   CUAAUCCGGCACAAACGAAC   147

2.5 Sequence 5464 from Patent EP2985353 NA coding protein psRNATarget
XM_008650936.2
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||=|=||||||||||||
targets:1792   CCAAUUCGGCACAAACGAAC   1811

2.5 PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA NA coding protein psRNATarget
NM_001175060.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||||||*||||||||
targets:234   GCAAUCCAGCAGAAACGAAC   253

1.5 Zea mays uncharacterized LOC100382311 (LOC100382311), mRNA NA coding protein psRNATarget
BT063859.2
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *||||||||||*||||||||
targets:234   GCAAUCCAGCAGAAACGAAC   253

1.5 Zea mays full-length cDNA clone ZM_BFc0113G11 mRNA, complete cds NA coding protein psRNATarget
XM_020550140.1
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *|||||||*|||||||||||
targets:3530   GCAAUCCAACACAAACGAAC   3549

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675573.2
ncRNA:20   AGUUAGGUCGUGUUUGCUUG   1
  *|||||||*|||||||||||
targets:3530   GCAAUCCAACACAAACGAAC   3549

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA NA coding protein psRNATarget
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