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BaseInfo

ncRNA ID novel_zma_miR7955
Species Zea mays
Class miRNA
Genome position Chr7:176990038-176990150 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 19
Mature sequence(if miRNA) 95 - UCUAACGUCUAUAGUUGAU - 113
Stem-loop(if miRNA) --          AUAG   A   -UU     -  AAAUA       C  C ACUACA
  UCUAACGUCU    UUG UUA   CAUUU AC     ACACCUU CA C      C
  ||||||||||    ||| |||   ||||| ||     ||||||| || |      A
  AGAUUGCAGA    AAC AAU   GUAAA UG     UGUGGGA GU G      C
CU          GAUA   A   CAU     A  AAUCC       A  U CACCAC
Stem-loop sequence UCUAACGUCUAUAGUUGAUUAUUCAUUUACAAAUAACACCUUCCACCACUACACACCACCACGUUGAAGGGUGUCCUAAGUAAAAUGUACUAAACAAAUAGAGACGUUAGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163827.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1491 from Patent EP2559767 NA coding protein psRNATarget
LQ235496.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1491 from Patent EP2985353 NA coding protein psRNATarget
HI403366.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1491 from Patent EP2074227 NA coding protein psRNATarget
LQ235360.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1355 from Patent EP2985353 NA coding protein psRNATarget
JB163691.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1355 from Patent EP2559767 NA coding protein psRNATarget
HI403230.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||||||||||||||||
targets:121   AUCAACUAUAGACGUUAGA   139

0.0 Sequence 1355 from Patent EP2074227 NA coding protein psRNATarget
JB170004.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  ||||||||*||||||||||
targets:133   AUCAACUAAAGACGUUAGA   151

1.5 Sequence 7668 from Patent EP2559767 NA coding protein psRNATarget
HI409543.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  ||||||||*||||||||||
targets:133   AUCAACUAAAGACGUUAGA   151

1.5 Sequence 7668 from Patent EP2074227 NA coding protein psRNATarget
LQ241673.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  ||||||||*||||||||||
targets:133   AUCAACUAAAGACGUUAGA   151

1.5 Sequence 7668 from Patent EP2985353 NA coding protein psRNATarget
XM_020552764.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  ||||||||*||||||||||
targets:3067   AUCAACUAGAGACGUUAGA   3085

1.5 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008681116.2
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  ||||||||*||||||||||
targets:3245   AUCAACUAGAGACGUUAGA   3263

1.5 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA NA coding protein psRNATarget
JB163685.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||=||*||||||||||
targets:121   AUCAAUUAGAGACGUUAGA   139

2.5 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
LQ235354.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||=||*||||||||||
targets:121   AUCAAUUAGAGACGUUAGA   139

2.5 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
HI403224.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |||||=||*||||||||||
targets:121   AUCAAUUAGAGACGUUAGA   139

2.5 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
HI403383.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:121   AACAACUAGAGACGUUAGA   139

2.5 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
JB163844.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:121   AACAACUAGAGACGUUAGA   139

2.5 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
LQ235513.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:121   AACAACUAGAGACGUUAGA   139

2.5 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
LQ235404.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:122   AACAACUAGAGACGUUAGA   140

2.5 Sequence 1399 from Patent EP2985353 NA coding protein psRNATarget
HI403274.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:122   AACAACUAGAGACGUUAGA   140

2.5 Sequence 1399 from Patent EP2074227 NA coding protein psRNATarget
JB163735.1
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:122   AACAACUAGAGACGUUAGA   140

2.5 Sequence 1399 from Patent EP2559767 NA coding protein psRNATarget
XM_008646350.2
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:1716   AACAACUAGAGACGUUAGA   1734

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
XM_008654898.2
ncRNA:19   UAGUUGAUAUCUGCAAUCU   1
  |*||||||*||||||||||
targets:110   AACAACUAGAGACGUUAGA   128

2.5 PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA NA coding protein psRNATarget
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