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BaseInfo

ncRNA ID	novel_zma_miR7945
Species	Zea mays
Class	miRNA
Genome position	Chr7:37828074-37828175 [+]
Reference genome	RefGen_v4
Source	SRR3385575
Length	24
Mature sequence(if miRNA)	1 - UAGAUUGGAGUGGAUUGAGGUGGU - 24
Stem-loop(if miRNA)	--UA                    GUAUAA  U         U    UAUG     GAUUGGAGUGGAUUGAGGUG      GG GUAUUGAAG GUAA    A     ||||||||||||||||||||      || ||||||||| ||||    A     CUGAUUUCACCUAACUUCAC      UC CAUAACUUU UAUU    C CUCC                    AUAAAA  -         C    UAAU
Stem-loop sequence	UAGAUUGGAGUGGAUUGAGGUGGUAUAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUAUCUUUCAAUACCUAAAAUACACUUCAAUCCACUUUAGUCCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943240.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*| targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	1.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*| targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134 Target Full Sequence	1.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*| targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   ||||||||||||||||||||||*= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||=||||||= targets:1333   UACAUCUCAAUCCACUUCAAUCUG   1356 Target Full Sequence	2.5	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   *|=||||||||||*|||||||||* targets:1066   CCUACCUCAAUCCUCUCCAAUCUC   1089 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **=|||||||||||||||||||*| targets:2376   UGUACCUCAAUCCACUCCAAUCCA   2399 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **=|||||||||||||||||||*| targets:2398   UGUACCUCAAUCCACUCCAAUCCA   2421 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||||||||** targets:351   UACAUCUCAAUCCACUCCAAUCCC   374 Target Full Sequence	2.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||||||||** targets:1767   UACAUCUCAAUCCACUCCAAUCCC   1790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||||||||** targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||||||||** targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   UGGUGGAGUUAGGUGAGGUUAGAU   1   **||=|||||||||||||||||** targets:1429   UACAUCUCAAUCCACUCCAAUCAC   1452 Target Full Sequence	2.5	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget