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BaseInfo

ncRNA ID	novel_zma_miR7944
Species	Zea mays
Class	miRNA
Genome position	Chr7:415937-416003 [-]
Reference genome	RefGen_v4
Source	SRR3385575
Length	21
Mature sequence(if miRNA)	1 - GGAGGACGAGGGCGACGGGAU - 21
Stem-loop(if miRNA)	--              U     GCAAAUAA    U   CUCGUCGUCUUCGU CCUCC        UUUG U   |||||||||||||| |||||        |||| A   GGGCAGCGGGAGCA GGAGG        GAAC C UA              -     ---AAGCC    U
Stem-loop sequence	CUCGUCGUCUUCGUUCCUCCGCAAAUAAUUUGUUACUCAAGCCGAAGGAGGACGAGGGCGACGGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ244992.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =||=||||||=|||||||||| targets:42   GUCUCGUCGCUCUCGUCCUCC   62 Target Full Sequence	2.5	Zea mays clone 12075 mRNA sequence	NA	coding protein	psRNATarget
BT086374.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =||=||||||=|||||||||| targets:20   GUCUCGUCGCUCUCGUCCUCC   40 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0158P21 mRNA, complete cds	NA	coding protein	psRNATarget
BT086832.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =||=||||||=|||||||||| targets:116   GUCUCGUCGCUCUCGUCCUCC   136 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0105O16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660977.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =|||=||||||||||||||=| targets:17   GUCCUGUCGCCCUCGUCCUUC   37 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 23 (LOC103637980), mRNA	NA	coding protein	psRNATarget
EU968649.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   **|=||||||||||||||||= targets:130   CCCUCGUCGCCCUCGUCCUCU   150 Target Full Sequence	2.0	Zea mays clone 323076 harpin inducing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157411.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   **|=||||||||||||||||= targets:130   CCCUCGUCGCCCUCGUCCUCU   150 Target Full Sequence	2.0	Zea mays harpin inducing protein (LOC100284516), mRNA	NA	coding protein	psRNATarget
XM_008647993.2	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   *|||=|||||||||*|||||| targets:2328   UUCCUGUCGCCCUCCUCCUCC   2348 Target Full Sequence	2.5	PREDICTED: Zea mays MACPF domain-containing protein At1g14780 (LOC103627695), mRNA	NA	coding protein	psRNATarget
NM_001137952.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*|=||||||||||||||||* targets:83   GCCUCGUCGCCCUCGUCCUCG   103 Target Full Sequence	2.0	Zea mays 7-hydroxymethyl chlorophyll a reductase chloroplastic (LOC100192754), mRNA	NA	coding protein	psRNATarget
BT034818.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*|=||||||||||||||||* targets:83   GCCUCGUCGCCCUCGUCCUCG   103 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0020N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682836.2	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*|=||||||||||||||||* targets:143   GCCUCGUCGCCCUCGUCCUCG   163 Target Full Sequence	2.0	PREDICTED: Zea mays 7-hydroxymethyl chlorophyll a reductase chloroplastic (LOC100192754), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU958046.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*|=||||||||||||||||* targets:93   GCCUCGUCGCCCUCGUCCUCG   113 Target Full Sequence	2.0	Zea mays clone 1670066 mRNA sequence	NA	coding protein	psRNATarget
BT055079.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*|=||||||||||||||||* targets:76   GCCUCGUCGCCCUCGUCCUCG   96 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0169D10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153448.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*||||*|||||||||||||| targets:316   GACCCGCCGCCCUCGUCCUCC   336 Target Full Sequence	1.0	Zea mays F-box domain containing protein (LOC100280529), mRNA	NA	coding protein	psRNATarget
EU952300.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*||||*|||||||||||||| targets:316   GACCCGCCGCCCUCGUCCUCC   336 Target Full Sequence	1.0	Zea mays clone 1276710 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674570.2	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   =*||||*|||||||||||||| targets:556   GACCCGCCGCCCUCGUCCUCC   576 Target Full Sequence	1.0	PREDICTED: Zea mays F-box domain containing protein (LOC100280529), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008648630.1	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   |*||=||||||||||*||||| targets:58   AACCUGUCGCCCUCGGCCUCC   78 Target Full Sequence	2.5	PREDICTED: Zea mays homeotic protein knotted-1-like (LOC103628428), mRNA	NA	coding protein	psRNATarget
XM_008679833.2	ncRNA:21   UAG-GGCAGCGGGAGCAGGAGG   1   *||-||*||||||||||||||| targets:693   CUCGCCCUCGCCCUCGUCCUCC   714 Target Full Sequence	3.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF094-like (LOC103652853), mRNA	NA	coding protein	psRNATarget
XM_008672255.2	ncRNA:21   UAGGGCAGCGGGAGCAGGAGG   1   **|=|||||||*||||||||| targets:92   CCCUCGUCGCCGUCGUCCUCC   112 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647739), mRNA	NA	coding protein	psRNATarget