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BaseInfo

ncRNA ID	novel_zma_miR7939
Species	Zea mays
Class	miRNA
Genome position	Chr6:103969734-103969851 [-]
Reference genome	RefGen_v4
Source	SRR3385575;SRR3385651
Length	21
Mature sequence(if miRNA)	98 - AGGUACAAGUCGAUGGUGCGG - 118
Stem-loop(if miRNA)	--             U  UG     A  A                    U G   A  G   AGGUACAAGUCGA GG  CGGCU UU GAGGCAACAUUGUUUUGGAU C ACA UA A   ||||||||||||| ||  ||||| || |||||||||||||||||||| | ||| || A   UCCAUGUUCAGCU CC  GCUGA AA CUCCGUUGUGACAGAACCUG G UGU GU G AU             C  GU     C  C                    U -   G  A
Stem-loop sequence	AGGUACAAGUCGAUGGUGCGGCUAUUAGAGGCAACAUUGUUUUGGAUUCGACAAUAGAAGAUGGUGUGUGUCCAAGACAGUGUUGCCUCCAACAGUCGUGCCCUCGACUUGUACCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JX469903.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:361   GGCCACAAUCGACUUGUACCU   381 Target Full Sequence	2.0	Zea mays subsp. mays clone UT3143 ARID-type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT069418.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:324   GGCCACAAUCGACUUGUACCU   344 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0127L12 mRNA, complete cds	NA	coding protein	psRNATarget
BT055100.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:834   GGCCACAAUCGACUUGUACCU   854 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0307I18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152860.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:834   GGCCACAAUCGACUUGUACCU   854 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279908 (pco101952), mRNA	NA	coding protein	psRNATarget
XM_020540472.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:2884   GGCCACAAUCGACUUGUACCU   2904 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100279908 (pco101952), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671989.1	ncRNA:21   GGCGUGGUAGCUGAACAUGGA   1   ***|||*|||||||||||||| targets:2937   GGCCACAAUCGACUUGUACCU   2957 Target Full Sequence	2.0	PREDICTED: Zea mays AT-rich interactive domain-containing protein 4 (LOC103647451), mRNA	NA	coding protein	psRNATarget