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BaseInfo

ncRNA ID novel_zma_miR7933
Species Zea mays
Class miRNA
Genome position Chr6:170619896-170619975 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 20
Mature sequence(if miRNA) 61 - CUCACUAUACAUAUCUGGUU - 80
Stem-loop(if miRNA) --  CC     C     C    ----U  UU           U
  CC  AUAUG UAUAG UGAG     GU  GGUGGCUUCAG U
  ||  ||||| ||||| ||||     ||  ||||||||||| C
  GG  UAUAC AUAUC ACUC     CG  UUAUUGAGGUU U
UU  UC     -     -    CUUGU  -U           G
Stem-loop sequence CCCCAUAUGCUAUAGCUGAGUGUUUGGUGGCUUCAGUUCUGUUGGAGUUAUUUGCUGUUCCUCACUAUACAUAUCUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY111274.1
ncRNA:20   UUGGUCUAUACAUAUCACUC   1
  ||||||||||||||||||||
targets:41   AACCAGAUAUGUAUAGUGAG   60

0.0 Zea mays CL15198_1 mRNA sequence NA coding protein psRNATarget
EZ060187.1
ncRNA:20   UUGGUCUAUACAUAUCACUC   1
  ||=|||*||||||||||||*
targets:125   AAUCAGCUAUGUAUAGUGAA   144

3.0 TSA: Zea mays contig61309, mRNA sequence NA coding protein psRNATarget