Search result

BaseInfo

ncRNA ID	novel_zma_miR7929
Species	Zea mays
Class	miRNA
Genome position	Chr6:86011548-86011599 [+]
Reference genome	RefGen_v4
Source	SRR3385575;SRR3385651;SRR3385660
Length	20
Mature sequence(if miRNA)	33 - CACAAAGCAAUGGAGAGCCC - 52
Stem-loop(if miRNA)	--        G         UCAGAG   GCUUUUCG UGUUUUGUG      C   |||||||| |||||||||   CGAGAGGU ACGAAACAC      G CC        A         UAACGA
Stem-loop sequence	GCUUUUCGGUGUUUUGUGUCAGAGCGAGCAAUCACAAAGCAAUGGAGAGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT016970.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   |||||||||||||||||||| targets:80   GGGCUCUCCAUUGCUUUGUG   99 Target Full Sequence	0.0	Zea mays clone E04912707E08.c mRNA sequence	NA	coding protein	psRNATarget
EZ061241.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   |||||||||||||||||||| targets:242   GGGCUCUCCAUUGCUUUGUG   261 Target Full Sequence	0.0	TSA: Zea mays contig62363, mRNA sequence	NA	coding protein	psRNATarget
EZ097222.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   ***=|||||||||||||||| targets:87   UCUUUCUCCAUUGCUUUGUG   106 Target Full Sequence	3.0	TSA: Zea mays contig32877, mRNA sequence	NA	coding protein	psRNATarget
BT055065.2	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   ***=|||||||||||||||| targets:478   UCUUUCUCCAUUGCUUUGUG   497 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0101E19 mRNA, complete cds	NA	coding protein	psRNATarget
EZ516890.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:116   UAGUUCCCCAUUGCUUUGUG   135 Target Full Sequence	3.0	TSA: Zea mays cultivar W22 CL282Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ054537.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:252   UAGUUCCCCAUUGCUUUGUG   271 Target Full Sequence	3.0	TSA: Zea mays contig55659, mRNA sequence	NA	coding protein	psRNATarget
BT016908.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:424   UAGUUCCCCAUUGCUUUGUG   443 Target Full Sequence	3.0	Zea mays clone Contig741 mRNA sequence	NA	coding protein	psRNATarget
BT018287.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:833   UAGUUCCCCAUUGCUUUGUG   852 Target Full Sequence	3.0	Zea mays clone EL01T0205C03.c mRNA sequence	NA	coding protein	psRNATarget
BT018296.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:849   UAGUUCCCCAUUGCUUUGUG   868 Target Full Sequence	3.0	Zea mays clone EL01T0205H09.c mRNA sequence	NA	coding protein	psRNATarget
AY596177.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:998   UAGUUCCCCAUUGCUUUGUG   1017 Target Full Sequence	3.0	Zea mays 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955349.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:998   UAGUUCCCCAUUGCUUUGUG   1017 Target Full Sequence	3.0	Zea mays clone 1528962 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963204.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:1007   UAGUUCCCCAUUGCUUUGUG   1026 Target Full Sequence	3.0	Zea mays clone 259086 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
AY103961.2	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:989   UAGUUCCCCAUUGCUUUGUG   1008 Target Full Sequence	3.0	Zea mays PCO071532 mRNA sequence	NA	coding protein	psRNATarget
EU952165.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:995   UAGUUCCCCAUUGCUUUGUG   1014 Target Full Sequence	3.0	Zea mays clone 1214718 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952219.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:1004   UAGUUCCCCAUUGCUUUGUG   1023 Target Full Sequence	3.0	Zea mays clone 1229179 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084826.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:985   UAGUUCCCCAUUGCUUUGUG   1004 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0188F20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112207.2	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:1116   UAGUUCCCCAUUGCUUUGUG   1135 Target Full Sequence	3.0	Zea mays 14-3-3-like protein GF14-C (LOC103643291), mRNA	NA	coding protein	psRNATarget
EU969767.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   **|=||*||||||||||||| targets:1357   UAGUUCCCCAUUGCUUUGUG   1376 Target Full Sequence	3.0	Zea mays clone 335392 14-3-3-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158766.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   ||||*|*||||||||||||* targets:1379   GGGCGCACCAUUGCUUUGUA   1398 Target Full Sequence	3.0	Zea mays cyclin delta-2 (LOC100285876), mRNA	NA	coding protein	psRNATarget
EU974438.1	ncRNA:20   CCCGAGAGGUAACGAAACAC   1   ||||*|*||||||||||||* targets:1379   GGGCGCACCAUUGCUUUGUA   1398 Target Full Sequence	3.0	Zea mays clone 449467 cyclin delta-2 mRNA, complete cds	NA	coding protein	psRNATarget