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BaseInfo

ncRNA ID novel_zma_miR7928
Species Zea mays
Class miRNA
Genome position Chr6:80111309-80111403 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 21
Mature sequence(if miRNA) 75 - ACCGCAUGUAGAAAUACGAUU - 95
Stem-loop(if miRNA) --   -                AUU        -   CAC       C
  UCG AUUUCUACAUGCGGUU   UAAGAAAA CGC   UAGAAAU A
  ||| ||||||||||||||||   |||||||| |||   ||||||| U
  AGC UAAAGAUGUACGCCAA   AUUCUUUU GCG   AUUUUUA G
UU   A                AGU        A   UAC       A
Stem-loop sequence UCGAUUUCUACAUGCGGUUAUUUAAGAAAACGCCACUAGAAAUCAUGAAUUUUUACAUGCGAUUUUCUUAUGAAACCGCAUGUAGAAAUACGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163445.1
ncRNA:21   UUAGCAUAAAGAUGUACGCCA   1
  ||||*||||||||||*|||||
targets:30   AAUCAUAUUUCUACAGGCGGU   50

2.5 Sequence 1109 from Patent EP2559767 NA coding protein psRNATarget
LQ235114.1
ncRNA:21   UUAGCAUAAAGAUGUACGCCA   1
  ||||*||||||||||*|||||
targets:30   AAUCAUAUUUCUACAGGCGGU   50

2.5 Sequence 1109 from Patent EP2985353 NA coding protein psRNATarget
HI402984.1
ncRNA:21   UUAGCAUAAAGAUGUACGCCA   1
  ||||*||||||||||*|||||
targets:30   AAUCAUAUUUCUACAGGCGGU   50

2.5 Sequence 1109 from Patent EP2074227 NA coding protein psRNATarget
EZ070179.1
ncRNA:21   UUAGCAUAAAGAUGUACGCCA   1
  ||*|**|||||||||||||||
targets:30   AAACACAUUUCUACAUGCGGU   50

3.0 TSA: Zea mays contig05816, mRNA sequence NA coding protein psRNATarget