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BaseInfo

ncRNA ID novel_zma_miR7920
Species Zea mays
Class miRNA
Genome position Chr1:285212144-285212188 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 21
Mature sequence(if miRNA) 1 - UCACGAUUAGUCGGACGAUCU - 21
Stem-loop(if miRNA) -AUCA C           C  C
     G CCGACUAAUCG GA U
     | ||||||||||| ||
     C GGCUGAUUAGC CU A
UCUAG A           A  A
Stem-loop sequence AUCAGCCCGACUAAUCGCGACUAAUCACGAUUAGUCGGACGAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020540426.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:807   AUAUCGUCCGACUAAUCGUGA   827

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020540423.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:807   AUAUCGUCCGACUAAUCGUGA   827

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540425.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:807   AUAUCGUCCGACUAAUCGUGA   827

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020540424.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:718   AUAUCGUCCGACUAAUCGUGA   738

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020540431.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:807   AUAUCGUCCGACUAAUCGUGA   827

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020540422.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*|||||||||||||||||||
targets:807   AUAUCGUCCGACUAAUCGUGA   827

0.0 PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X1, mRNA NA coding protein psRNATarget
JB163647.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:26   AUAUCGUCCGACUAAUCGCGA   46

1.5 Sequence 1311 from Patent EP2559767 NA coding protein psRNATarget
LQ235316.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:26   AUAUCGUCCGACUAAUCGCGA   46

1.5 Sequence 1311 from Patent EP2985353 NA coding protein psRNATarget
HI403186.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:26   AUAUCGUCCGACUAAUCGCGA   46

1.5 Sequence 1311 from Patent EP2074227 NA coding protein psRNATarget
XM_020546379.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:42   AAAUCGUCCGACUAAUCGCGA   62

1.5 PREDICTED: Zea mays uncharacterized LOC103634963 (LOC103634963), mRNA NA coding protein psRNATarget
XM_008654484.2
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:135   AUAUCGUCCGACUAAUCGCGA   155

1.5 PREDICTED: Zea mays uncharacterized LOC103632744 (LOC103632744), mRNA NA coding protein psRNATarget
XM_008677401.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:2268   AAAUCGUCCGACUAAUCGCGA   2288

1.5 PREDICTED: Zea mays uncharacterized LOC103651696 (LOC103651696), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546477.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  |*||||||||||||||||*||
targets:2480   AAAUCGUCCGACUAAUCGCGA   2500

1.5 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
XM_020539497.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  *|||=**||||||||||||||
targets:3925   CGAUUAGCCGACUAAUCGUGA   3945

3.0 PREDICTED: Zea mays uncharacterized LOC100276587 (LOC100276587), mRNA NA coding protein psRNATarget
BT042602.1
ncRNA:21   UCUAGCAGGCUGAUUAGCACU   1
  *||||**||||||||||||||
targets:89   CGAUCAGCCGACUAAUCGUGA   109

2.0 Zea mays full-length cDNA clone ZM_BFb0366K05 mRNA, complete cds NA coding protein psRNATarget
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