Search result

BaseInfo

ncRNA ID	novel_zma_miR7917
Species	Zea mays
Class	miRNA
Genome position	Chr5:212711497-212711623 [+]
Reference genome	RefGen_v4
Source	SRR3385575
Length	20
Mature sequence(if miRNA)	1 - UGCAUUCAAACACCUCCCUA - 20
Stem-loop(if miRNA)	--              U     UA     UU      A     -AU   CAGACGU  A  U  UA   UGCAUUCAAACACC CCCUA  ACACG  UACUCC UAACA   GCA       UC UC AG  U   |||||||||||||| |||||  |||||  |||||| |||||   |||       || || ||  A   ACGUAAGUUUGUGG GGGAU  UGUGU  GUGGGG AUUGU   CGU       AG AG UC  A UG              -     --     UC      -     GUU   CUUAAAC  A  -  UA
Stem-loop sequence	UGCAUUCAAACACCUCCCUAUAACACGUUUACUCCAUAACAAUGCACAGACGUUCAUCUAGUAUAAAUCUGAAGACAAAUUCUGCUUGUGUUAGGGGUGCUUGUGUUAGGGGGUGUUUGAAUGCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084681.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   *||||=|||||||||||||| targets:332   GAGGGGGGUGUUUGAAUGCA   351 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds	NA	coding protein	psRNATarget
HI409979.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:66   UAUGGGGGUGUUUGAAUGCA   85 Target Full Sequence	2.0	Sequence 8104 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242109.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:66   UAUGGGGGUGUUUGAAUGCA   85 Target Full Sequence	2.0	Sequence 8104 from Patent EP2985353	NA	coding protein	psRNATarget
JB170440.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:66   UAUGGGGGUGUUUGAAUGCA   85 Target Full Sequence	2.0	Sequence 8104 from Patent EP2559767	NA	coding protein	psRNATarget
BT067062.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||||||||||||||||= targets:1007   UAAGGAGGUGUUUGAAUGCG   1026 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget
BT083749.2	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:1436   UAAGGGGGUGUUUGAAUGCA   1455 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0035A22 mRNA, complete cds	NA	coding protein	psRNATarget
EU953408.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:1277   UAAGGGGGUGUUUGAAUGCA   1296 Target Full Sequence	2.0	Zea mays clone 1408713 mRNA sequence	NA	coding protein	psRNATarget
BT067503.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:3605   UAAGGGGGUGUUUGAAUGCA   3624 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*||=|||||||||||||| targets:3605   UAAGGGGGUGUUUGAAUGCA   3624 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
JB163475.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*||||||||||||||| targets:3   UAAGAAGGUGUUUGAAUGCA   22 Target Full Sequence	2.0	Sequence 1139 from Patent EP2559767	NA	coding protein	psRNATarget
HI403014.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*||||||||||||||| targets:3   UAAGAAGGUGUUUGAAUGCA   22 Target Full Sequence	2.0	Sequence 1139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235144.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*||||||||||||||| targets:3   UAAGAAGGUGUUUGAAUGCA   22 Target Full Sequence	2.0	Sequence 1139 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   |***|||||||||||||||| targets:4   UUCAGAGGUGUUUGAAUGCA   23 Target Full Sequence	3.0	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
HI402970.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   |***|||||||||||||||| targets:4   UUCAGAGGUGUUUGAAUGCA   23 Target Full Sequence	3.0	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
JB163431.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   |***|||||||||||||||| targets:4   UUCAGAGGUGUUUGAAUGCA   23 Target Full Sequence	3.0	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
HI403007.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*=|||||||||||||| targets:2   UAAGAGGGUGUUUGAAUGCA   21 Target Full Sequence	3.0	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget
JB163468.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*=|||||||||||||| targets:2   UAAGAGGGUGUUUGAAUGCA   21 Target Full Sequence	3.0	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||*|*=|||||||||||||| targets:2   UAAGAGGGUGUUUGAAUGCA   21 Target Full Sequence	3.0	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
BT063644.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||**|=|||||||||||||| targets:844   UAAUGGGGUGUUUGAAUGCA   863 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||**|=|||||||||||||| targets:844   UAAUGGGGUGUUUGAAUGCA   863 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
EU975068.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   ||**|=|||||||||||||| targets:2170   UACAGGGGUGUUUGAAUGCA   2189 Target Full Sequence	3.0	Zea mays clone 466506 mRNA sequence	NA	coding protein	psRNATarget
LQ235167.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   **|*|=|||||||||||||| targets:7   CUGAGGGGUGUUUGAAUGCA   26 Target Full Sequence	3.0	Sequence 1162 from Patent EP2985353	NA	coding protein	psRNATarget
HI403037.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   **|*|=|||||||||||||| targets:7   CUGAGGGGUGUUUGAAUGCA   26 Target Full Sequence	3.0	Sequence 1162 from Patent EP2074227	NA	coding protein	psRNATarget
JB163498.1	ncRNA:20   AUCCCUCCACAAACUUACGU   1   **|*|=|||||||||||||| targets:7   CUGAGGGGUGUUUGAAUGCA   26 Target Full Sequence	3.0	Sequence 1162 from Patent EP2559767	NA	coding protein	psRNATarget