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BaseInfo

ncRNA ID	novel_zma_miR7908
Species	Zea mays
Class	miRNA
Genome position	Chr5:86316933-86316977 [-]
Reference genome	RefGen_v4
Source	SRR3385575;SRR3385660;SRR5100255
Length	19
Mature sequence(if miRNA)	1 - GGGCGCGCCGCCGUCGGUC - 19
Stem-loop(if miRNA)	--   C     U        CCU   CCG CGGUG GCGCGUCC   C   ||| ||||| ||||||||   GGC GCCGC CGCGCGGG   A CU   U     -        AUG
Stem-loop sequence	CCGCCGGUGUGCGCGUCCCCUCAGUAGGGCGCGCCGCCGUCGGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551928.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||||||||||||||||||* targets:1028   GACCGACGGCGGCGCGCCG   1046 Target Full Sequence	1.0	PREDICTED: Zea mays dehydration-responsive element-binding protein 1I-like (LOC109945610), mRNA	NA	coding protein	psRNATarget
XM_008646416.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |=||||||||||||||=|| targets:1825   GGCCGACGGCGGCGCGUCC   1843 Target Full Sequence	2.5	PREDICTED: Zea mays ankyrin repeat domain-containing protein 65 (LOC103626031), mRNA	NA	coding protein	psRNATarget
EU965350.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:59   CACCGACGGCGGCGCGUCC   77 Target Full Sequence	2.5	Zea mays clone 285497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955034.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:57   CACCGACGGCGGCGCGUCC   75 Target Full Sequence	2.5	Zea mays clone 1503182 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035477.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:44   CACCGACGGCGGCGCGUCC   62 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0065B22 mRNA, complete cds	NA	coding protein	psRNATarget
AY108932.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:55   CACCGACGGCGGCGCGUCC   73 Target Full Sequence	2.5	Zea mays PCO132392 mRNA sequence	NA	coding protein	psRNATarget
NM_001138404.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:63   CACCGACGGCGGCGCGUCC   81 Target Full Sequence	2.5	Zea mays ycf54-like protein (pco132392), mRNA	NA	coding protein	psRNATarget
EU967463.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||=|| targets:63   CACCGACGGCGGCGCGUCC   81 Target Full Sequence	2.5	Zea mays clone 303369 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084119.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|=|||||||||||||||| targets:1003   AAUCGACGGCGGCGCGCCC   1021 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0077N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177210.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|=|||||||||||||||| targets:1003   AAUCGACGGCGGCGCGCCC   1021 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384746 (LOC100384746), mRNA	NA	coding protein	psRNATarget
BT054740.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:812   CACCGACGGCGGCGCGCCA   830 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017B13 mRNA, complete cds	NA	coding protein	psRNATarget
BT062789.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:1112   CACCGACGGCGGCGCGCCA   1130 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0347D10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679780.2	ncRNA:19   CUG-GCUGCCGCCGCGCGGG   1   |=|-|||||||||||||||| targets:528   GGCUCGACGGCGGCGCGCCC   547 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103652800), mRNA	NA	coding protein	psRNATarget
BT060671.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:1708   CACCGACGGCGGCGCGCCA   1726 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0031K10 mRNA, complete cds	NA	coding protein	psRNATarget
EU971435.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:1786   CACCGACGGCGGCGCGCCA   1804 Target Full Sequence	2.0	Zea mays clone 364676 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151394.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:1836   CACCGACGGCGGCGCGCCA   1854 Target Full Sequence	2.0	Zea mays OSJNBa0033G05.10-like protein (si945024a02), mRNA	NA	coding protein	psRNATarget
BT067728.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|||||||||||||||||* targets:1836   CACCGACGGCGGCGCGCCA   1854 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0145D03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671895.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *=|||=||||||||||||| targets:637   CGCCGGCGGCGGCGCGCCC   655 Target Full Sequence	3.0	PREDICTED: Zea mays two pore potassium channel c (LOC103647353), mRNA	NA	coding protein	psRNATarget
NM_001196022.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *=|||=||||||||||||| targets:140   CGCCGGCGGCGGCGCGCCC   158 Target Full Sequence	3.0	Zea mays Protein EXECUTER 2 chloroplastic (LOC100501252), mRNA	NA	coding protein	psRNATarget
BT084894.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *=|||=||||||||||||| targets:140   CGCCGGCGGCGGCGCGCCC   158 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0202J13 mRNA, complete cds	NA	coding protein	psRNATarget
EU957473.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *=|||=||||||||||||| targets:76   CGCCGGCGGCGGCGCGCCC   94 Target Full Sequence	3.0	Zea mays clone 1593691 mRNA sequence	NA	coding protein	psRNATarget
EU957603.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *=|||=||||||||||||| targets:109   CGCCGGCGGCGGCGCGCCC   127 Target Full Sequence	3.0	Zea mays clone 1598891 mRNA sequence	NA	coding protein	psRNATarget
EZ098218.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |||||*||||||||=|||| targets:21   GACCGUCGGCGGCGUGCCC   39 Target Full Sequence	2.5	TSA: Zea mays contig33873, mRNA sequence	NA	coding protein	psRNATarget
EU949882.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |||||=|||||||||*||| targets:79   GACCGGCGGCGGCGCUCCC   97 Target Full Sequence	2.5	Zea mays clone 450848 mRNA sequence	NA	coding protein	psRNATarget
XM_008673550.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |||||*||||||||||=|| targets:180   GACCGUCGGCGGCGCGUCC   198 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103649236), mRNA	NA	coding protein	psRNATarget
BT033461.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |=|||||||||*||||||| targets:752   GGCCGACGGCGUCGCGCCC   770 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002J17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136820.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |=|||||||||*||||||| targets:752   GGCCGACGGCGUCGCGCCC   770 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191386 (LOC100191386), mRNA	NA	coding protein	psRNATarget
NM_001136820.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |=|||||||||*||||||| targets:787   GGCCGACGGCGUCGCGCCC   805 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191386 (LOC100191386), mRNA	NA	coding protein	psRNATarget
XM_008646946.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||=|||||||*|||||||| targets:31   GAUCGACGGCCGCGCGCCC   49 Target Full Sequence	2.5	PREDICTED: Zea mays phytosulfokine receptor 1 (LOC103626523), mRNA	NA	coding protein	psRNATarget
EZ090927.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|=|||||||||||||||* targets:20   CAUCGACGGCGGCGCGCCG   38 Target Full Sequence	3.0	TSA: Zea mays contig26574, mRNA sequence	NA	coding protein	psRNATarget
XM_008657814.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *|=|||||||||||||||* targets:698   CAUCGACGGCGGCGCGCCG   716 Target Full Sequence	3.0	PREDICTED: Zea mays DUF679 domain membrane protein 7 (LOC103635334), mRNA	NA	coding protein	psRNATarget
BT033851.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   **|||=||||||||||||| targets:791   UUCCGGCGGCGGCGCGCCC   809 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0124J02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137109.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   **|||=||||||||||||| targets:791   UUCCGGCGGCGGCGCGCCC   809 Target Full Sequence	3.0	Zea mays Protein NRT1/ PTR FAMILY 2.9 (LOC100191680), mRNA	NA	coding protein	psRNATarget
BT085942.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   **|||=||||||||||||| targets:1046   UUCCGGCGGCGGCGCGCCC   1064 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0087N13 mRNA, complete cds	NA	coding protein	psRNATarget
BT067715.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   **|||=||||||||||||| targets:1105   UUCCGGCGGCGGCGCGCCC   1123 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0132J09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672278.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   **|||=||||||||||||| targets:1121   UUCCGGCGGCGGCGCGCCC   1139 Target Full Sequence	3.0	PREDICTED: Zea mays Protein NRT1/ PTR FAMILY 2.9 (LOC100191680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175790.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *||||*||||||||||||| targets:303   CACCGCCGGCGGCGCGCCC   321 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100277915), mRNA	NA	coding protein	psRNATarget
BT066247.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *||||*||||||||||||| targets:303   CACCGCCGGCGGCGCGCCC   321 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0127F24 mRNA, complete cds	NA	coding protein	psRNATarget
EU971170.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   *||||*||||||||||||| targets:319   CACCGCCGGCGGCGCGCCC   337 Target Full Sequence	2.0	Zea mays clone 358843 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139293.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||*|||||||||||||||* targets:23   GAGCGACGGCGGCGCGCCA   41 Target Full Sequence	2.0	Zea mays ARM repeat superfamily protein (LOC100194252), mRNA	NA	coding protein	psRNATarget
BT036748.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||*|||||||||||||||* targets:23   GAGCGACGGCGGCGCGCCA   41 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0137F06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678412.2	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||*|||||||||||||||* targets:116   GAGCGACGGCGGCGCGCCA   134 Target Full Sequence	2.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100194252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT083873.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||*|||||||||||||||* targets:23   GAGCGACGGCGGCGCGCCA   41 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0049J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT061489.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||=|*=||||||||||||| targets:634   GAUCCGCGGCGGCGCGCCC   652 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0152A16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175789.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||=|*=||||||||||||| targets:560   GAUCCGCGGCGGCGCGCCC   578 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383123 (LOC100383123), mRNA	NA	coding protein	psRNATarget
BT066242.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   ||=|*=||||||||||||| targets:560   GAUCCGCGGCGGCGCGCCC   578 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120H09 mRNA, complete cds	NA	coding protein	psRNATarget
EU975966.1	ncRNA:19   CUGGCUGCCGCCGCGCGGG   1   |=*||=||||||||||||| targets:313   GGGCGGCGGCGGCGCGCCC   331 Target Full Sequence	3.0	Zea mays clone 506910 glycosyltransferase 6 mRNA, complete cds	NA	coding protein	psRNATarget