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BaseInfo

ncRNA ID novel_zma_miR7902
Species Zea mays
Class miRNA
Genome position Chr4:230843390-230843453 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 24
Mature sequence(if miRNA) 1 - GUCCCUGAAGUCUAGCCUGGGUUG - 24
Stem-loop(if miRNA) --     C   -AU   -        C   G U
  GCCCA GGC   GCU CAGGGGCG UGG G C
  ||||| |||   ||| |||||||| ||| | C
  UGGGU CCG   UGA GUCCCUGU ACC U C
GU     -   AUC   A        C   G U
Stem-loop sequence GCCCACGGCAUGCUCAGGGGCGCUGGGGUCCCUUGCCACUGUCCCUGAAGUCUAGCCUGGGUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ052266.1
ncRNA:24   GUU--GGGUCCGAUCUGAAGUCCCUG   1
  ||=--|=|||*=*|||||||||||||
targets:45   CAGUUCUCAGUUCAGACUUCAGGGAC   70

3.0 TSA: Zea mays contig53387, mRNA sequence NA coding protein psRNATarget
AY111962.1
ncRNA:24   GUU--GGGUCCGAUCUGAAGUCCCUG   1
  ||=--|=|||*=*|||||||||||||
targets:46   CAGUUCUCAGUUCAGACUUCAGGGAC   71

3.0 Zea mays CL10159_1 mRNA sequence NA coding protein psRNATarget