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BaseInfo

ncRNA ID novel_zma_miR7898
Species Zea mays
Class miRNA
Genome position Chr4:198190042-198190140 [+]
Reference genome RefGen_v4
Source SRR3385575
Length 20
Mature sequence(if miRNA) 80 - UCUUCUACGUACAUCGCUUU - 99
Stem-loop(if miRNA) --    U       C       A   GAGCAACAGAGACAGAUAAGAUUA GGGAGAGAA
  AGUG GUGUGUG AGAAGAG AUU                        C         C
  |||| ||||||| ||||||| |||                        |
  UCGC UACAUGC UCUUCUU UAA                        G         G
UU    -       A       A   --------------------GAGA UGUCAGGAC
Stem-loop sequence AGUGUGUGUGUGCAGAAGAGAAUUGAGCAACAGAGACAGAUAAGAUUACGGGAGAGAACGCAGGACUGUGAGAGAAUAUUCUUCUACGUACAUCGCUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ051612.1
ncRNA:20   UUUCGCUACAUGCAUCUUCU   1
  ||||||||||||||||||||
targets:9   AAAGCGAUGUACGUAGAAGA   28

0.0 TSA: Zea mays contig52732, mRNA sequence NA coding protein psRNATarget