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BaseInfo

ncRNA ID novel_zma_miR7865
Species Zea mays
Class miRNA
Genome position Chr3:73224214-73224359 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 22
Mature sequence(if miRNA) 1 - UACGAUGAUGAGUUGGACCCGC - 22
Stem-loop(if miRNA) --       C  G       ACGACAC     CACA    -AA   A  UUCA   G     ---    GA     CC
  GGGUUCG CU AUCGUCG       GGAGG    GAGG   GGC UC    GUG GGGCC   GCGG  AUGGC  U
  ||||||| || |||||||       |||||    ||||   ||| ||    ||| |||||   ||||  |||||  C
  CCCAGGU GA UAGUAGC       CCUUC    CUCC   CCG AG    CGC CCCGG   CGCC  UACUG  G
CG       U  G       AUCACGC     --AA    AAC   -  ----   A     CUA    AG     CA
Stem-loop sequence GGGUUCGCCUGAUCGUCGACGACACGGAGGCACAGAGGAAGGCAUCUUCAGUGGGGGCCGCGGGAAUGGCCCUCGACGUCAUGACCGCAUCGGCCCACGCGAGCCCAACCUCAACUUCCCGCACUACGAUGAUGAGUUGGACCCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542873.1
ncRNA:22   CGCCCAGGUUGAGUAGUAGCAU   1
  ****||||=||||||||||||*
targets:576   CAUCGUCCGACUCAUCAUCGUC   597

3.0 PREDICTED: Zea mays hypothetical protein (LOC103635319), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657803.2
ncRNA:22   CGCCCAGGUUGAGUAGUAGCAU   1
  ****||||=||||||||||||*
targets:555   CAUCGUCCGACUCAUCAUCGUC   576

3.0 PREDICTED: Zea mays hypothetical protein (LOC103635319), transcript variant X1, mRNA NA coding protein psRNATarget