Search result

BaseInfo

ncRNA ID novel_zma_miR7860
Species Zea mays
Class miRNA
Genome position Chr2:201279881-201279983 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 21
Mature sequence(if miRNA) 83 - GCCUCGCAAGUUGCUACCCUC - 103
Stem-loop(if miRNA) --   -    AA     UA  CU  U  -   CCU      CUCUUCC    UU
  GCC UCGC  GUUGC  CC  CU CC UCA   UCACUC       UCGU  C
  ||| ||||  |||||  ||  || || |||   ||||||       ||||  C
  CGG GGCG  CGGCG  GG  GG GG AGU   AGUGGG       GGCA  C
CA   C    -G     GC  -C  C  C   -CU      -CUAACU    CC
Stem-loop sequence GCCUCGCAAGUUGCUACCCUCUUCCUCACCUUCACUCCUCUUCCUCGUUUCCCCCACGGUCAAUCGGGUGAUCUGACGGCGGCGGCGGCGGCGGCGGCGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT034396.1
ncRNA:21   CUCCCAUCGUUGAACGCUCCG   1
  **|||*=|||||||||||||*
targets:419   AUGGGCGGCAACUUGCGAGGA   439

3.0 Zea mays full-length cDNA clone ZM_BFc0165N24 mRNA, complete cds NA coding protein psRNATarget
NM_001308345.1
ncRNA:21   CUCCCAUCGUUGAACGCUCCG   1
  **|||*=|||||||||||||*
targets:476   AUGGGCGGCAACUUGCGAGGA   496

3.0 Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100192490), transcript variant 2, mRNA NA coding protein psRNATarget
BT034479.1
ncRNA:21   CUCCCAUCGUUGAACGCUCCG   1
  **|||*=|||||||||||||*
targets:456   AUGGGCGGCAACUUGCGAGGA   476

3.0 Zea mays full-length cDNA clone ZM_BFc0173I10 mRNA, complete cds NA coding protein psRNATarget
EU969810.1
ncRNA:21   CUCCCAUCGUUGAACGCUCCG   1
  **|||*=|||||||||||||*
targets:466   AUGGGCGGCAACUUGCGAGGA   486

3.0 Zea mays clone 335928 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001137710.2
ncRNA:21   CUCCCAUCGUUGAACGCUCCG   1
  **|||*=|||||||||||||*
targets:476   AUGGGCGGCAACUUGCGAGGA   496

3.0 Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100192490), transcript variant 1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.