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BaseInfo

ncRNA ID	novel_zma_miR7834
Species	Zea mays
Class	miRNA
Genome position	Chr9:70138576-70138777 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	1 - AAAGUUAGUCGUUCGAAUUGAAGA - 24
Stem-loop(if miRNA)	--AAA     UC                         A            A         A   C       UCA           U      CCA  AAU      GUUAG  GUUCGAAUUGAAGAACUAACCUUAG CAGAAAAGUUAG CAAAGUGUG CAA UUAGGCA   AACCAAAUAGA CCUUAG   CA   C      |||||  ||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||   ||||||||||| ||||||   ||   A      CAAUC  CAAGCUUAACUUCUUGAUUGGAAUC GUCUUUUCAAUC GUUUCACAC GUU AAUCUGU   UUGGUUUGUCU GGAAUU   GU   A GAUUC     CA                         C            C         C   C       CAC           -      CCC  ACA
Stem-loop sequence	AAAGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGACAGAAAAGUUAGACAAAGUGUGACAACUUAGGCAUCAAACCAAAUAGAUCCUUAGCCACAAAUCAAACAUGCCCUUAAGGUCUGUUUGGUUCACUGUCUAACUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACACCUAACCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235113.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:26   UCUUCAAUUCGAACGACUAACCUU   49 Target Full Sequence	1.5	Sequence 1108 from Patent EP2985353	NA	coding protein	psRNATarget
HI402983.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:26   UCUUCAAUUCGAACGACUAACCUU   49 Target Full Sequence	1.5	Sequence 1108 from Patent EP2074227	NA	coding protein	psRNATarget
JB163444.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:26   UCUUCAAUUCGAACGACUAACCUU   49 Target Full Sequence	1.5	Sequence 1108 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:979   UCUUCAAUUCGAACGACUAACCUU   1002 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:979   UCUUCAAUUCGAACGACUAACCUU   1002 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671564.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:1239   UCUUCAAUUCGAACGACUAACCUU   1262 Target Full Sequence	1.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA	NA	coding protein	psRNATarget
XM_020549322.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:1239   UCUUCAAUUCGAACGACUAACCUU   1262 Target Full Sequence	1.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA	NA	coding protein	psRNATarget
BT062066.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:1570   UCUUCAAUUCGAACGACUAACCUU   1593 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:1095   UCUUCAAUUCGAACGACUAACCUU   1118 Target Full Sequence	1.5	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:756   UCUUCAAUUCGAACGACUAACCUU   779 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:756   UCUUCAAUUCGAACGACUAACCUU   779 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:756   UCUUCAAUUCGAACGACUAACCUU   779 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||||||||||||||*|| targets:2721   UCUUCAAUUCGAACGACUAACCUU   2744 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   ||||*||||||=|||||||||||| targets:65   UCUUAAAUUCGGACGACUAACUUU   88 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   ||||*||||||=|||||||||||| targets:65   UCUUAAAUUCGGACGACUAACUUU   88 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   ||||*||||||=|||||||||||| targets:65   UCUUAAAUUCGGACGACUAACUUU   88 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||=||||||||||*||| targets:71   UCUUCAAUUUGAACGACUAAGUUU   94 Target Full Sequence	2.5	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |=|||||||||||||||||||*|| targets:1026   UUUUCAAUUCGAACGACUAACCUU   1049 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   ||||=||||||||||||||||*|| targets:2452   UCUUUAAUUCGAACGACUAACCUU   2475 Target Full Sequence	1.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||||=|||||||||||*|| targets:739   UCUUCAAUUUGAACGACUAACCUU   762 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||*|||||||||||||*|| targets:65   UCUUCAACUCGAACGACUAACCUU   88 Target Full Sequence	2.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||*|||||||||||||*|| targets:65   UCUUCAACUCGAACGACUAACCUU   88 Target Full Sequence	2.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||||*|||||||||||||*|| targets:65   UCUUCAACUCGAACGACUAACCUU   88 Target Full Sequence	2.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
EU945129.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |=|||=|||=*||||||||||||| targets:594   UUUUCGAUUUAAACGACUAACUUU   617 Target Full Sequence	3.0	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:173   UAUUCAAUUCGAACGACUAACCUU   196 Target Full Sequence	1.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:173   UAUUCAAUUCGAACGACUAACCUU   196 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:977   UAUUCAAUUCGAACGACUAACCUU   1000 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:901   UAUUCAAUUCGAACGACUAACCUU   924 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1368   UAUUCAAUUCGAACGACUAACCUU   1391 Target Full Sequence	1.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1465   UAUUCAAUUCGAACGACUAACCUU   1488 Target Full Sequence	1.5	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1475   UAUUCAAUUCGAACGACUAACCUU   1498 Target Full Sequence	1.5	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1385   UAUUCAAUUCGAACGACUAACCUU   1408 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1543   UAUUCAAUUCGAACGACUAACCUU   1566 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1693   UAUUCAAUUCGAACGACUAACAUU   1716 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1763   UAUUCAAUUCGAACGACUAACAUU   1786 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:1763   UAUUCAAUUCGAACGACUAACAUU   1786 Target Full Sequence	1.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:845   UAUUCAAUUCGAACGACUAACCUU   868 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |*|||||||||||||||||||*|| targets:2623   UAUUCAAUUCGAACGACUAACCUU   2646 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||*|||||||||||||||*|| targets:3185   UCUUCUAUUCGAACGACUAACCUU   3208 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||*|||||||||||||||*|| targets:3313   UCUUCUAUUCGAACGACUAACCUU   3336 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AGAAGUUAAGCUUGCUGAUUGAAA   1   |||||*|||||||||||||||*|| targets:3320   UCUUCUAUUCGAACGACUAACCUU   3343 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget