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BaseInfo

ncRNA ID novel_zma_miR7831
Species Zea mays
Class miRNA
Genome position Chr8:94042169-94042272 [-]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 1 - AUCUAUAUGGAUUGGGGUAGAACC - 24
Stem-loop(if miRNA) ---UUAU UU                GA   --A UG    GGA       AUAU
       U  CAAUCCAUAUGGAUUG  GGG   U  AUAC   UUAGUAG    U
       |  ||||||||||||||||  |||   |  ||||   |||||||
       G  GUUAGGUAUAUCUAAC  CCC   A  UAUG   GAUCAUU    U
CCAAGAU GG                UC   CAA GU    ---       CAGU
Stem-loop sequence UUAUUUUCAAUCCAUAUGGAUUGGAGGGAUUGAUACGGAUUAGUAGAUAUUUUGACUUACUAGGUAUUGAAACCCCCUCAAUCUAUAUGGAUUGGGGUAGAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT055069.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:896   GGUUCUACCCCAAUCCAUAUGGAU   919

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||||=||||||||||||||
targets:220   GGUUCUACCUCAAUCCAUAUAGAU   243

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1682   GGUUCUACCCCAAUCCAUAUGGAU   1705

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1909   GGUUCUACCCCAAUCCAUAUGGAU   1932

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1909   GGUUCUACCCCAAUCCAUAUGGAU   1932

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:890   GGUUCUACCCCAAUCCAUAUGGAU   913

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:864   GGUUCUACCCCAAUCCAUAUGGAU   887

1.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU961636.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1048   GGUUCUACCCCAAUCCAUAUGGAU   1071

1.5 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
EU959345.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:792   GGUUCUACCCCAAUCCAUAUGGAU   815

1.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:791   GGUUCUACCCCAAUCCAUAUGGAU   814

1.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT062922.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:845   GGUUCUACCCCAAUCCAUAUGGAU   868

1.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU972046.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:703   GGUUCUACCCCAAUCCAUAUGGAU   726

1.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:364   GGUUCUACCCCAAUCCAUAUGGAU   387

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EZ061352.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:117   GGUUCUACCCCAAUCCAUAUGGAU   140

1.5 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
EU956568.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||||=||||||||||=|||
targets:1549   GGUUCUACCUCAAUCCAUAUGGAU   1572

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
EU959053.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=||*
targets:791   GGUUCUACCCCAAUCCAUAUGGAK   814

2.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||*|||||||||||||||=|||
targets:793   GGUUYUACCCCAAUCCAUAUGGAU   816

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
XM_020549432.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||===||||||||||||||
targets:1941   GGUUCUAUUUCAAUCCAUAUAGAU   1964

3.0 PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008673800.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||===||||||||||||||
targets:1652   GGUUCUAUUUCAAUCCAUAUAGAU   1675

3.0 PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  ||||*|||||||||||||||=|||
targets:1617   GGUUAUACCCCAAUCCAUAUGGAU   1640

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||*||||||||||||=|||
targets:629   GGUUCUAACCCAAUCCAUAUGGAU   652

2.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |*||||||||||||||||||=|||
targets:858   GAUUCUACCCCAAUCCAUAUGGAU   881

1.5 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
EZ068230.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |||||||*||||||||||||=|||
targets:39   GGUUCUAGCCCAAUCCAUAUGGAU   62

2.5 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget
LQ238773.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |*||||||||||||||||||=|||
targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40

1.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
HI406643.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |*||||||||||||||||||=|||
targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40

1.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
JB167104.1
ncRNA:24   CCAAGAUGGGGUUAGGUAUAUCUA   1
  |*||||||||||||||||||=|||
targets:17   GUUUCUACCCCAAUCCAUAUGGAU   40

1.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
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