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BaseInfo

ncRNA ID	ath-miRf10086-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UGCUCGAUUGUCUGGUUGAG - NA
Stem-loop(if miRNA)	U    UG        AAU  UC   -U  UAA  U UACUCAAC CAGG  GUCGAGUG   GG  GAG  GA   GC G |||||||| ||||  ||||||||   ||  |||  ||   || GUGAGUUG GUCU  UAGCUCGU   CC  CUC  CU   UG G         -    GU        GUU  UU   UU  -UC  A
Stem-loop sequence	UACUCAACUCAGGUGGUCGAGUGAAUGGUCGAGUGAUAAGCUGGAGUCUUCUUCUCUUCCUUGUGCUCGAUUGUCUGGUUGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT012022.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:149   CUCAACCAGACACUCGAGCA   168 Target Full Sequence	1.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:426   CUCAACCAGACACUCGAGCA   445 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:660   CUCAACCAGACACUCGAGCA   679 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:771   CUCAACCAGACACUCGAGCA   790 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:1011   CUCAACCAGACACUCGAGCA   1030 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||*||||||| targets:1820   CUCAACCAGACACUCGAGCA   1839 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AK229792.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||||||||** targets:773   CUCAACCAGACAAUCGAGGU   792 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative vacuolar sorting protein 35, partial sequence., clone: RAFL21-78-B19	NA	coding protein	psRNATarget
NM_001334699.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||||||||** targets:1125   CUCAACCAGACAAUCGAGGU   1144 Target Full Sequence	2.5	Arabidopsis thaliana VPS35 homolog B (VPS35B), mRNA	VPS35 homolog B(VPS35B)	coding protein	psRNATarget
AK228153.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||||||||** targets:1732   CUCAACCAGACAAUCGAGGU   1751 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative vacuolar sorting protein 35, complete cds, clone: RAFL14-61-K14	NA	coding protein	psRNATarget
NM_106235.5	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   ||||||||||||||||||** targets:1750   CUCAACCAGACAAUCGAGGU   1769 Target Full Sequence	2.5	Arabidopsis thaliana VPS35 homolog B (VPS35B), mRNA	VPS35 homolog B(VPS35B)	coding protein	psRNATarget
NM_123800.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   **=|||*||||||||||||| targets:523   AAUAACAAGACAAUCGAGCA   542 Target Full Sequence	3.0	Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein partial mRNA	Tetratricopeptide repeat (TPR)-like superfamily protein(AT5G44330)	coding protein	psRNATarget
DQ056706.1	ncRNA:20   GAGUUGGUCUGUUAGCUCGU   1   **=|||*||||||||||||| targets:523   AAUAACAAGACAAUCGAGCA   542 Target Full Sequence	3.0	Arabidopsis thaliana male sterility MS5 family protein (At5g44330) mRNA, complete cds	NA	coding protein	psRNATarget