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BaseInfo

ncRNA ID novel_zma_miR7826
Species Zea mays
Class miRNA
Genome position Chr8:110778310-110778391 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 21
Mature sequence(if miRNA) 1 - UGAGGGGGAUUGAAGAGGAUU - 21
Stem-loop(if miRNA) --  AG            G        C            A
  UG  GGGGAUUGAAGA GAUUAAAU CCCUCCUAUUCA A
  ||  |||||||||||| |||||||| ||||||||||||
  AC  CCCCUAACUUCU CUAAUUUA GGGAGGAUAAGU A
UA  CU            A        A            U
Stem-loop sequence UGAGGGGGAUUGAAGAGGAUUAAAUCCCCUCCUAUUCAAAAUUGAAUAGGAGGGAAUUUAAUCAUCUUCAAUCCCCUCCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166498.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

1.0 Sequence 4162 from Patent EP2559767 NA coding protein psRNATarget
LQ238167.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

1.0 Sequence 4162 from Patent EP2985353 NA coding protein psRNATarget
HI406037.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:92   AAUCCCCUUCAAUCCCCCUCA   112

1.0 Sequence 4162 from Patent EP2074227 NA coding protein psRNATarget
EU960473.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:99   AAUCCCCUUCAAUCCCCCUCA   119

1.0 Zea mays clone 225209 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU963775.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:232   AAUCCCCUUCAAUCCCCCUCA   252

1.0 Zea mays clone 272562 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU942334.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:240   AAUCCCCUUCAAUCCCCCUCA   260

1.0 Zea mays clone 1480331 mRNA sequence NA coding protein psRNATarget
EU961196.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:374   AAUCCCCUUCAAUCCCCCUCA   394

1.0 Zea mays clone 233383 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964415.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:758   AAUCCCCUUCAAUCCCCCUCA   778

1.0 Zea mays clone 278711 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001245881.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:758   AAUCCCCUUCAAUCCCCCUCA   778

1.0 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT069598.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:853   AAUCCCCUUCAAUCCCCCUCA   873

1.0 Zea mays full-length cDNA clone ZM_BFb0180C20 mRNA, complete cds NA coding protein psRNATarget
BT069064.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:821   AAUCCCCUUCAAUCCCCCUCA   841

1.0 Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds NA coding protein psRNATarget
BT065224.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:804   AAUCCCCUUCAAUCCCCCUCA   824

1.0 Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds NA coding protein psRNATarget
BT062705.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:859   AAUCCCCUUCAAUCCCCCUCA   879

1.0 Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds NA coding protein psRNATarget
NM_001150473.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:859   AAUCCCCUUCAAUCCCCCUCA   879

1.0 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
XM_008678753.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:904   AAUCCCCUUCAAUCCCCCUCA   924

1.0 PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA NA coding protein psRNATarget
EU964521.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*|||||||||||||||
targets:920   AAUCCCCUUCAAUCCCCCUCA   940

1.0 Zea mays clone 279503 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968340.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||||||||||=||||
targets:719   AAUCCACUUCAAUCCCUCUCA   739

2.5 Zea mays clone 319179 mRNA sequence NA coding protein psRNATarget
BT054737.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||||||||||=||||
targets:189   AAUCCCCUUCAAUCCCUCUCA   209

2.5 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
EU942361.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||||||||||*||||
targets:514   AAUCCACUUCAAUCCCACUCA   534

2.5 Zea mays clone 1487121 mRNA sequence NA coding protein psRNATarget
BT061531.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  ||*||*|||||||||||||||
targets:841   AAACCCCUUCAAUCCCCCUCA   861

2.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
XM_020552749.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||*||||||||||||
targets:3271   AAUCCCCUCCAAUCCCCCUCA   3291

2.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||*||||||||||||
targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612

2.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||*||||||||||||
targets:1592   AAUCCCCUCCAAUCCCCCUCA   1612

2.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  |||||*||*||||||||||||
targets:3919   AAUCCACUCCAAUCCCCCUCA   3939

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008683400.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  *=||*|||||||||||||||*
targets:276   UGUCAUCUUCAAUCCCCCUCC   296

2.0 PREDICTED: Zea mays uncharacterized LOC100276156 (LOC100276156), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543383.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **|||*|||||||||||=|||
targets:230   UUUCCCCUUCAAUCCCCUUCA   250

2.5 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
NM_001322053.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||=|*||||||||||||
targets:1305   CUUCCUUUGCAAUCCCCCUCA   1325

2.5 Zea mays Calmodulin-binding transcription activator 4 (LOC100384320), mRNA NA coding protein psRNATarget
XM_008675062.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||=|*||||||||||||
targets:1481   CUUCCUUUGCAAUCCCCCUCA   1501

2.5 PREDICTED: Zea mays Calmodulin-binding transcription activator 4 (LOC100384320), transcript variant X1, mRNA NA coding protein psRNATarget
BT041450.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||||||||||||*|||*
targets:42   CCUCCUCUUCAAUCCCACUCC   62

2.5 Zea mays full-length cDNA clone ZM_BFc0036E14 mRNA, complete cds NA coding protein psRNATarget
DQ245449.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||||||||||||*|||*
targets:22   CCUCCUCUUCAAUCCCACUCC   42

2.5 Zea mays clone 15717 mRNA sequence NA coding protein psRNATarget
BT061413.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||||||||||||*|||*
targets:108   CCUCCUCUUCAAUCCCACUCC   128

2.5 Zea mays full-length cDNA clone ZM_BFb0143H02 mRNA, complete cds NA coding protein psRNATarget
NM_001151612.2
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||||||||||||*|||*
targets:116   CCUCCUCUUCAAUCCCACUCC   136

2.5 Zea mays uncharacterized LOC100278292 (LOC100278292), mRNA NA coding protein psRNATarget
EU972793.1
ncRNA:21   UUAGGAGAAGUUAGGGGGAGU   1
  **||||||||||||||*|||*
targets:117   CCUCCUCUUCAAUCCCACUCC   137

2.5 Zea mays clone 388057 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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