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BaseInfo

ncRNA ID	novel_zma_miR7823
Species	Zea mays
Class	miRNA
Genome position	Chr7:17582854-17582927 [-]
Reference genome	RefGen_v4
Source	SRR3341905
Length	21
Mature sequence(if miRNA)	1 - ACAUGGAUUGAGGUGAAUACA - 21
Stem-loop(if miRNA)	--                 C   U    -------    U   UAUUCACCUCAAUCCAU UGU UUGG       GGUG U   ||||||||||||||||| ||| ||||       |||| C   AUAAGUGGAGUUAGGUA ACA AACU       CCAC C AC                 C   C    CACCUAA    A
Stem-loop sequence	UAUUCACCUCAAUCCAUCUGUUUUGGGGUGUUCCACACCAAUCCACUCAACACACAUGGAUUGAGGUGAAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942746.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ||||||||||||||||||||| targets:341   UGUAUUCACCUCAAUCCAUGU   361 Target Full Sequence	0.0	Zea mays clone 1533321 mRNA sequence	NA	coding protein	psRNATarget
LQ235208.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   |||||||||||=||||||||| targets:4   UGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1203 from Patent EP2985353	NA	coding protein	psRNATarget
JB163539.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   |||||||||||=||||||||| targets:4   UGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1203 from Patent EP2559767	NA	coding protein	psRNATarget
HI403078.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   |||||||||||=||||||||| targets:4   UGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1203 from Patent EP2074227	NA	coding protein	psRNATarget
JB163488.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ||||||=||||=||||||||| targets:4   UGUAUUUACCUUAAUCCAUGU   24 Target Full Sequence	2.5	Sequence 1152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235157.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ||||||=||||=||||||||| targets:4   UGUAUUUACCUUAAUCCAUGU   24 Target Full Sequence	2.5	Sequence 1152 from Patent EP2985353	NA	coding protein	psRNATarget
HI403027.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ||||||=||||=||||||||| targets:4   UGUAUUUACCUUAAUCCAUGU   24 Target Full Sequence	2.5	Sequence 1152 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020540490.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:1028   CGUAUUCAUCUCAAUCCAUGU   1048 Target Full Sequence	1.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540489.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:978   CGUAUUCAUCUCAAUCCAUGU   998 Target Full Sequence	1.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065432.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:947   CGUAUUCAUCUCAAUCCAUGU   967 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0153M09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153718.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:947   CGUAUUCAUCUCAAUCCAUGU   967 Target Full Sequence	1.5	Zea mays RNA polymerase II Rpb4 core protein (umc1549a), mRNA	NA	coding protein	psRNATarget
EU953864.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:937   CGUAUUCAUCUCAAUCCAUGU   957 Target Full Sequence	1.5	Zea mays clone 1447962 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
EU959927.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:962   CGUAUUCAUCUCAAUCCAUGU   982 Target Full Sequence	1.5	Zea mays clone 220699 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109209.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:924   CGUAUUCAUCUCAAUCCAUGU   944 Target Full Sequence	1.5	Zea mays PCO083694 mRNA sequence	NA	coding protein	psRNATarget
XM_020548227.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:734   CGUAUUCAUCUCAAUCCAUGU   754 Target Full Sequence	1.5	PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA	NA	coding protein	psRNATarget
XM_020548228.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:683   CGUAUUCAUCUCAAUCCAUGU   703 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA	NA	coding protein	psRNATarget
XM_020548226.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:656   CGUAUUCAUCUCAAUCCAUGU   676 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA	NA	coding protein	psRNATarget
EZ089181.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||=|||||||||||| targets:342   CGUAUUCAUCUCAAUCCAUGU   362 Target Full Sequence	1.5	TSA: Zea mays contig24827, mRNA sequence	NA	coding protein	psRNATarget
HI403033.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||=||||||||| targets:4   CGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
JB163494.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||=||||||||| targets:4   CGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||=||||||||| targets:4   CGUAUUCACCUUAAUCCAUGU   24 Target Full Sequence	1.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
EU955601.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   |||||*||||||||||||||| targets:472   UGUAUCCACCUCAAUCCAUGU   492 Target Full Sequence	1.0	Zea mays clone 1539227 mRNA sequence	NA	coding protein	psRNATarget
XM_008660445.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   |||*||||=|||||||||||| targets:1285   UGUUUUCAUCUCAAUCCAUGU   1305 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103637714), mRNA	NA	coding protein	psRNATarget
BT067709.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||||||||||*| targets:1772   AGUAUUCACCUCAAUCCAUAU   1792 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0125K08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149644.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||||||||||*| targets:1772   AGUAUUCACCUCAAUCCAUAU   1792 Target Full Sequence	1.5	Zea mays RNA methyltransferase family protein (cl27616_1), mRNA	NA	coding protein	psRNATarget
EU957013.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||||||||||*| targets:1786   AGUAUUCACCUCAAUCCAUAU   1806 Target Full Sequence	1.5	Zea mays clone 1580497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT042729.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *||||||||||||||||||*| targets:1702   AGUAUUCACCUCAAUCCAUAU   1722 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0030P17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||||*|| targets:1323   AGUAUUCACCUCAAUCCACGU   1343 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||||*|| targets:1026   AGUAUUCACCUCAAUCCACGU   1046 Target Full Sequence	1.5	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
EU961221.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:996   AGUAUUCACCUCAAUCAAUGU   1016 Target Full Sequence	1.5	Zea mays clone 233606 ras-related protein ARA-3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155425.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:996   AGUAUUCACCUCAAUCAAUGU   1016 Target Full Sequence	1.5	Zea mays uncharacterized LOC100282517 (pco128668), mRNA	NA	coding protein	psRNATarget
XM_008669748.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:999   AGUAUUCACCUCAAUCAAUGU   1019 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069613.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:1048   AGUAUUCACCUCAAUCAAUGU   1068 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181A19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669749.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:937   AGUAUUCACCUCAAUCAAUGU   957 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT035355.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:937   AGUAUUCACCUCAAUCAAUGU   957 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057D23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669750.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||||||||||||*|||| targets:706   AGUAUUCACCUCAAUCAAUGU   726 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163470.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||||||||||||*||||| targets:93   CUAAUUCACCUCAAUACAUGU   113 Target Full Sequence	2.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
HI403009.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||||||||||||*||||| targets:93   CUAAUUCACCUCAAUACAUGU   113 Target Full Sequence	2.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||||||||||||*||||| targets:93   CUAAUUCACCUCAAUACAUGU   113 Target Full Sequence	2.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||||||*| targets:3310   AGUAUUGACCUCAAUCCAUAU   3330 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||||||*| targets:3215   AGUAUUGACCUCAAUCCAUAU   3235 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||||||*| targets:3129   AGUAUUGACCUCAAUCCAUAU   3149 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
HI403316.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||*||||| targets:18   AGUAUUGACCUCAAUACAUGU   38 Target Full Sequence	2.5	Sequence 1441 from Patent EP2074227	NA	coding protein	psRNATarget
JB163777.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||*||||| targets:18   AGUAUUGACCUCAAUACAUGU   38 Target Full Sequence	2.5	Sequence 1441 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235446.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   *|||||*||||||||*||||| targets:18   AGUAUUGACCUCAAUACAUGU   38 Target Full Sequence	2.5	Sequence 1441 from Patent EP2985353	NA	coding protein	psRNATarget
BT069846.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||*||||||||||||||| targets:83   CCAAUACACCUCAAUCCAUGU   103 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0304I20 mRNA, complete cds	NA	coding protein	psRNATarget
EU973948.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||*||||||||||||||| targets:892   CUAAUCCACCUCAAUCCAUGU   912 Target Full Sequence	2.0	Zea mays clone 424847 plasma membrane associated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158675.1	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||*||||||||||||||| targets:892   CUAAUCCACCUCAAUCCAUGU   912 Target Full Sequence	2.0	Zea mays plasma membrane associated protein (LOC100285785), mRNA	NA	coding protein	psRNATarget
BT084613.2	ncRNA:21   ACAUAAGUGGAGUUAGGUACA   1   ***||*||||||||||||||| targets:82   CCAAUACACCUCAAUCCAUGU   102 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0145P16 mRNA, complete cds	NA	coding protein	psRNATarget