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BaseInfo

ncRNA ID novel_zma_miR7800
Species Zea mays
Class miRNA
Genome position Chr1:123278290-123278411 [+]
Reference genome RefGen_v4
Source SRR1745812;SRR5105959
Length 21
Mature sequence(if miRNA) 1 - UUGUUCGGUUGCGUCUGGAUC - 21
Stem-loop(if miRNA) --           C  C     C    U       AG       C      CCGUAG   A
  UUGUUCGGUUG GU UGGAU GAAG GGAUUGA  GGGAUUA AUCUCU      UCA A
  ||||||||||| || ||||| |||| |||||||  ||||||| ||||||      |||
  AACAAGCCAAC CA ACCUA CUUC CCUAACU  CCCUAAU UAGAGG      AGU A
AG           A  A     A    C       CU       C      AAGAUA   U
Stem-loop sequence UUGUUCGGUUGCGUCUGGAUCGAAGUGGAUUGAAGGGGAUUACAUCUCUCCGUAGUCAAAAUUGAAUAGAAGGAGAUCUAAUCCCUCUCAAUCCCCUUCAAUCCAAACACAACCGAACAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY110278.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  |||||||||||||||||||||
targets:197   GAUCCAGACGCAACCGAACAA   217

0.0 Zea mays CL14707_1 mRNA sequence NA coding protein psRNATarget
JB166405.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4069 from Patent EP2559767 NA coding protein psRNATarget
HI405944.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4069 from Patent EP2074227 NA coding protein psRNATarget
LQ238074.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4069 from Patent EP2985353 NA coding protein psRNATarget
LQ238077.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4072 from Patent EP2985353 NA coding protein psRNATarget
HI405947.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4072 from Patent EP2074227 NA coding protein psRNATarget
JB166408.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||=||||||||||
targets:109   GAUCCAGACGUAACCGAACAA   129

1.5 Sequence 4072 from Patent EP2559767 NA coding protein psRNATarget
EU946897.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||||||||||||||||=||
targets:315   GAUCCAGACGCAACCGAAUAA   335

1.5 Zea mays clone 324711 mRNA sequence NA coding protein psRNATarget
BT017268.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  ||||=||||||||||||||||
targets:931   GAUCUAGACGCAACCGAACAA   951

1.0 Zea mays clone EL01N0312A05.c mRNA sequence NA coding protein psRNATarget
BT085111.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  |||||||=|||||||||||||
targets:1423   GAUCCAGGCGCAACCGAACAA   1443

1.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
BT036315.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:713   UAUCCAGACGCAACCGAACAA   733

0.0 Zea mays full-length cDNA clone ZM_BFb0106N02 mRNA, complete cds NA coding protein psRNATarget
NM_001138999.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:713   UAUCCAGACGCAACCGAACAA   733

0.0 Zea mays uncharacterized LOC100193927 (LOC100193927), mRNA NA coding protein psRNATarget
EU948310.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:753   UAUCCAGACGCAACCGAACAA   773

0.0 Zea mays clone 372688 mRNA sequence NA coding protein psRNATarget
BT061759.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:1618   UAUCCAGACGCAACCGAACAA   1638

0.0 Zea mays full-length cDNA clone ZM_BFb0180I03 mRNA, complete cds NA coding protein psRNATarget
XM_020553085.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2733   UAUCCAGACGCAACCGAACAA   2753

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020553084.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2798   UAUCCAGACGCAACCGAACAA   2818

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020553083.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2812   UAUCCAGACGCAACCGAACAA   2832

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020553082.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2820   UAUCCAGACGCAACCGAACAA   2840

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008682997.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2823   UAUCCAGACGCAACCGAACAA   2843

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008682996.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2827   UAUCCAGACGCAACCGAACAA   2847

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008682995.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2842   UAUCCAGACGCAACCGAACAA   2862

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008682994.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2888   UAUCCAGACGCAACCGAACAA   2908

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008682993.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2892   UAUCCAGACGCAACCGAACAA   2912

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008682992.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2902   UAUCCAGACGCAACCGAACAA   2922

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682991.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2910   UAUCCAGACGCAACCGAACAA   2930

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682990.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||||||||||||||||||||
targets:2914   UAUCCAGACGCAACCGAACAA   2934

0.0 PREDICTED: Zea mays uncharacterized LOC100193927 (LOC100193927), transcript variant X1, mRNA NA coding protein psRNATarget
BT068750.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *|||||||||||||||||=||
targets:143   AAUCCAGACGCAACCGAAUAA   163

1.5 Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds NA coding protein psRNATarget
HI403013.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||=|||||||||=|||||||
targets:61   AAUUCAGACGCAAUCGAACAA   81

2.5 Sequence 1138 from Patent EP2074227 NA coding protein psRNATarget
JB163474.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||=|||||||||=|||||||
targets:61   AAUUCAGACGCAAUCGAACAA   81

2.5 Sequence 1138 from Patent EP2559767 NA coding protein psRNATarget
LQ235143.1
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *||=|||||||||=|||||||
targets:61   AAUUCAGACGCAAUCGAACAA   81

2.5 Sequence 1138 from Patent EP2985353 NA coding protein psRNATarget
XM_008661937.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  *|||=|||=||||||||||||
targets:680   AAUCUAGAUGCAACCGAACAA   700

2.5 PREDICTED: Zea mays putative phototropic-responsive NPH3 family protein (LOC103639140), transcript variant X1, mRNA NA coding protein psRNATarget
BT069231.2
ncRNA:21   CUAGGUCUGCGUUGGCUUGUU   1
  |||||||=|*|||||||||||
targets:1074   GAUCCAGGCACAACCGAACAA   1094

2.5 Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds NA coding protein psRNATarget
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