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BaseInfo

ncRNA ID novel_zma_miR7794
Species Zea mays
Class miRNA
Genome position Chr6:126458107-126458289 [-]
Reference genome RefGen_v4
Source SRR3341905
Length 23
Mature sequence(if miRNA) 1 - AUAAACUUUGAUUAGCCGGAAUA - 23
Stem-loop(if miRNA) --    AC                       G               A                            G              
  UUCC  CUAAUCAAAGUUUAUAUAAAUUA AGAAGCAAUCCGGUU GGAAUCGUUCCGACCCAUCAAUCCGAUA AAACGAACAAGGCCU
  ||||  ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||A
  AAGG  GAUUAGUUUCAAAUAUAUUUAAU UCUUCGUUAGGCCGA CCUUAGCAAGGCUGGGUGGUUAGGCUGU UUUGCUUGUUCCGGA
AU    CC                       A               G                            G              
Stem-loop sequence UUCCACCUAAUCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCAUCAAUCCGAUAGAAACGAACAAGGCCUAAGGCCUUGUUCGUUUGUGUCGGAUUGGUGGGUCGGAACGAUUCCGAGCCGGAUUGCUUCUAUAAUUUAUAUAAACUUUGAUUAGCCGGAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538654.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:799   CAUUCCGGCUAAUCAAAGUUUAU   821

0.0 PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175005.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:1691   CAUUCCGGCUAAUCAAAGUUUAU   1713

0.0 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
BT063644.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:1691   CAUUCCGGCUAAUCAAAGUUUAU   1713

0.0 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
XM_008670105.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:1049   CAUUCCGGCUAAUCAAAGUUUAU   1071

0.0 PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA NA coding protein psRNATarget
EU955083.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:1122   CAUUCCGGCUAAUCAAAGUUUAU   1144

0.0 Zea mays clone 1508988 plant-specific domain TIGR01627 family protein mRNA, complete cds NA coding protein psRNATarget
NM_001153908.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:1122   CAUUCCGGCUAAUCAAAGUUUAU   1144

0.0 Zea mays plant-specific domain TIGR01627 family protein (LOC100280988), mRNA NA coding protein psRNATarget
EU973171.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *||||||||||||||||||||||
targets:690   CAUUCCGGCUAAUCAAAGUUUAU   712

0.0 Zea mays clone 394490 mRNA sequence NA coding protein psRNATarget
EZ050562.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=|||||||||||||||||||||
targets:83   CGUUCCGGCUAAUCAAAGUUUAU   105

0.0 TSA: Zea mays contig51682, mRNA sequence NA coding protein psRNATarget
BT087645.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  |||||||||||||||||*|||||
targets:1445   UAUUCCGGCUAAUCAAAUUUUAU   1467

1.5 Zea mays full-length cDNA clone ZM_BFb0146F04 mRNA, complete cds NA coding protein psRNATarget
EZ060491.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  |=||||*||||||||||||||||
targets:160   UGUUCCAGCUAAUCAAAGUUUAU   182

1.0 TSA: Zea mays contig61613, mRNA sequence NA coding protein psRNATarget
XM_008668968.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||*||||||||||||||||
targets:622   CAUUCCAGCUAAUCAAAGUUUAU   644

1.0 PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA NA coding protein psRNATarget
AY103713.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||*||||||||||||||||
targets:563   CAUUCCAGCUAAUCAAAGUUUAU   585

1.0 Zea mays PCO076540 mRNA sequence NA coding protein psRNATarget
BT084172.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||*||||||||||||||||
targets:548   CAUUCCAGCUAAUCAAAGUUUAU   570

1.0 Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds NA coding protein psRNATarget
EU952826.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||*||||||||||||||||
targets:683   CAUUCCAGCUAAUCAAAGUUUAU   705

1.0 Zea mays clone 1290653 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020540976.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:4448   CGUUCCAGCUAAUCAAAGUUUAU   4470

1.0 PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539318.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:2621   CGUUCCAGCUAAUCAAAGUUUAU   2643

1.0 PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650716.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:2618   CGUUCCAGCUAAUCAAAGUUUAU   2640

1.0 PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001175834.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:888   CGUUCCAGCUAAUCAAAGUUUAU   910

1.0 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
BT066445.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:888   CGUUCCAGCUAAUCAAAGUUUAU   910

1.0 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
XM_008654752.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:2707   CGUUCCAGCUAAUCAAAGUUUAU   2729

1.0 PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA NA coding protein psRNATarget
EU973341.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1761   CGUUCCAGCUAAUCAAAGUUUAU   1783

1.0 Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds NA coding protein psRNATarget
NM_001158559.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1761   CGUUCCAGCUAAUCAAAGUUUAU   1783

1.0 Zea mays uncharacterized LOC100285668 (IDP752), mRNA NA coding protein psRNATarget
EU972216.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1298   CGUUCCAGCUAAUCAAAGUUUAU   1320

1.0 Zea mays clone 377576 mRNA sequence NA coding protein psRNATarget
BT035367.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1280   CGUUCCAGCUAAUCAAAGUUUAU   1302

1.0 Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds NA coding protein psRNATarget
NM_001138328.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1280   CGUUCCAGCUAAUCAAAGUUUAU   1302

1.0 Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA NA coding protein psRNATarget
EU957814.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:1019   CGUUCCAGCUAAUCAAAGUUUAU   1041

1.0 Zea mays clone 1624339 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY103808.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:590   CGUUCCAGCUAAUCAAAGUUUAU   612

1.0 Zea mays PCO103670 mRNA sequence NA coding protein psRNATarget
EU941248.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:150   CGUUCCAGCUAAUCAAAGUUUAU   172

1.0 Zea mays clone 1431203 mRNA sequence NA coding protein psRNATarget
EZ063705.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||||||||||*||||||||
targets:283   CGUUCCGGCUAAUCUAAGUUUAU   305

1.5 TSA: Zea mays contig64827, mRNA sequence NA coding protein psRNATarget
JB166396.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:42   CGUUCCAGCUAAUCAAAGUUUAU   64

1.0 Sequence 4060 from Patent EP2559767 NA coding protein psRNATarget
LQ238065.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:42   CGUUCCAGCUAAUCAAAGUUUAU   64

1.0 Sequence 4060 from Patent EP2985353 NA coding protein psRNATarget
HI405935.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:42   CGUUCCAGCUAAUCAAAGUUUAU   64

1.0 Sequence 4060 from Patent EP2074227 NA coding protein psRNATarget
JB166387.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4051 from Patent EP2559767 NA coding protein psRNATarget
JB166365.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4029 from Patent EP2559767 NA coding protein psRNATarget
HI405926.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4051 from Patent EP2074227 NA coding protein psRNATarget
LQ238056.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4051 from Patent EP2985353 NA coding protein psRNATarget
LQ238034.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4029 from Patent EP2985353 NA coding protein psRNATarget
HI405904.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||||
targets:37   CGUUCCAGCUAAUCAAAGUUUAU   59

1.0 Sequence 4029 from Patent EP2074227 NA coding protein psRNATarget
EZ095711.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=|||||||||||||||*|||||
targets:76   CGUUCCGGCUAAUCAAAAUUUAU   98

1.5 TSA: Zea mays contig31364, mRNA sequence NA coding protein psRNATarget
XM_008676824.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*|=||||||||||||||
targets:852   CGUUCCAGUUAAUCAAAGUUUAU   874

2.0 PREDICTED: Zea mays Nuclear protein (LOC103651203), mRNA NA coding protein psRNATarget
EU971977.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||=|||||||*||||||||||
targets:759   CGUUUCGGCUAAACAAAGUUUAU   781

2.5 Zea mays clone 373036 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU975407.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||=|||||||||
targets:505   CGUUCCAGCUAAUUAAAGUUUAU   527

2.5 Zea mays clone 489701 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB166398.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||=|
targets:38   CGUUCCAGCUAAUCAAAGUUUGU   60

2.5 Sequence 4062 from Patent EP2559767 NA coding protein psRNATarget
LQ238067.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||=|
targets:38   CGUUCCAGCUAAUCAAAGUUUGU   60

2.5 Sequence 4062 from Patent EP2985353 NA coding protein psRNATarget
HI405937.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||||=|
targets:38   CGUUCCAGCUAAUCAAAGUUUGU   60

2.5 Sequence 4062 from Patent EP2074227 NA coding protein psRNATarget
XM_008650936.2
ncRNA:23   AUA--AGGC-CGAUUAGUUUCAAAUA   1
  *||--|=||-||||||||||||||||
targets:1724   AAUCGUUCGAGCUAAUCAAAGUUUAU   1749

3.0 PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA NA coding protein psRNATarget
BT063869.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||*||||||||||*|||||
targets:858   CAUUCCAGCUAAUCAAAAUUUAU   880

2.5 Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds NA coding protein psRNATarget
BT035867.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||**|||||||||||||||
targets:533   CAUUCCAACUAAUCAAAGUUUAU   555

2.0 Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds NA coding protein psRNATarget
NM_001138677.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *|||||**|||||||||||||||
targets:533   CAUUCCAACUAAUCAAAGUUUAU   555

2.0 Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA NA coding protein psRNATarget
XM_008657076.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  |=||*=*||||||||||||||||
targets:2084   UGUUGUAGCUAAUCAAAGUUUAU   2106

3.0 PREDICTED: Zea mays 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (LOC103634611), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676374.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||**|||||||||||||||
targets:2025   CGUUCCAACUAAUCAAAGUUUAU   2047

2.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008676366.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||**|||||||||||||||
targets:1949   CGUUCCAACUAAUCAAAGUUUAU   1971

2.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676377.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||**|||||||||||||||
targets:1931   CGUUCCAACUAAUCAAAGUUUAU   1953

2.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676360.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||**|||||||||||||||
targets:1857   CGUUCCAACUAAUCAAAGUUUAU   1879

2.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676565.2
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||||*|||
targets:1122   CGUUCCAGCUAAUCAAAGUCUAU   1144

2.5 PREDICTED: Zea mays NDR1/HIN1-like protein 10 (LOC103650970), mRNA NA coding protein psRNATarget
LQ238094.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||*|||||
targets:45   CGUUCCAGCUAAUCAAAAUUUAU   67

2.5 Sequence 4089 from Patent EP2985353 NA coding protein psRNATarget
HI405964.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||*|||||
targets:45   CGUUCCAGCUAAUCAAAAUUUAU   67

2.5 Sequence 4089 from Patent EP2074227 NA coding protein psRNATarget
JB166425.1
ncRNA:23   AUAAGGCCGAUUAGUUUCAAAUA   1
  *=||||*||||||||||*|||||
targets:45   CGUUCCAGCUAAUCAAAAUUUAU   67

2.5 Sequence 4089 from Patent EP2559767 NA coding protein psRNATarget
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