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BaseInfo

ncRNA ID	novel_zma_miR7792
Species	Zea mays
Class	miRNA
Genome position	Chr6:25092336-25092477 [+]
Reference genome	RefGen_v4
Source	SRR3341905;SRR3385575;SRR3385651
Length	23
Mature sequence(if miRNA)	120 - ACCAGAUCGCUUGAUUGCACGCU - 142
Stem-loop(if miRNA)	--                                 A ---------      A   UU  AUA GAAAGGGGUUAA   CGUGCAAUCAAGCGAUCUGGUGCAUCCAAUCAA C         CAUCCA CUG  AC   U            A   ||||||||||||||||||||||||||||||||| |         |||||| |||  ||   |   GCACGUUAGUUCGCUAGACCACGUAGGUUAGUU G         GUAGGU GAC  UG   U            A UC                                 C CUAGACCAC      G   UU  -GA CAUGAAAAAAUG
Stem-loop sequence	CGUGCAAUCAAGCGAUCUGGUGCAUCCAAUCAAACCAUCCAACUGUUACAUAUGAAAGGGGUUAAAAGUAAAAAAGUACUAGGUUUCAGGUGGAUGCACCAGAUCGCUUGAUUGGAUGCACCAGAUCGCUUGAUUGCACGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085458.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   ||||||||||||||||||||||| targets:1252   AGCGUGCAAUCAAGCGAUCUGGU   1274 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0015G12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551490.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||||||||||||||||| targets:26   AGCAUGCAAUCAAGCGAUCUGGU   48 Target Full Sequence	0.0	PREDICTED: Zea mays Galactose oxidase/kelch repeat superfamily protein (cl68462_1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008664963.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||||||||||||||||| targets:2672   AGCAUGCAAUCAAGCGAUCUGGU   2694 Target Full Sequence	0.0	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103641627), mRNA	NA	coding protein	psRNATarget
LQ235452.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*|||||||=||||||||||| targets:32   AGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2985353	NA	coding protein	psRNATarget
HI403322.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*|||||||=||||||||||| targets:32   AGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2074227	NA	coding protein	psRNATarget
JB163783.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*|||||||=||||||||||| targets:32   AGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2559767	NA	coding protein	psRNATarget
BT083806.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*|||||||=||||||||||| targets:1283   AGCAUGCAAUCGAGCGAUCUGGU   1305 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0041M07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177124.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*|||||||=||||||||||| targets:1283   AGCAUGCAAUCGAGCGAUCUGGU   1305 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384630 (LOC100384630), mRNA	NA	coding protein	psRNATarget
LQ238168.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2985353	NA	coding protein	psRNATarget
JB166499.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2559767	NA	coding protein	psRNATarget
HI406038.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2074227	NA	coding protein	psRNATarget
JB163891.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||*|||||||||||||| targets:32   AGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2559767	NA	coding protein	psRNATarget
HI403430.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||*|||||||||||||| targets:32   AGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235560.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||*|||||||||||||| targets:32   AGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001150809.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||||||||||||||*|| targets:1296   AGCAUGCAAUCAAGCGAUCUAGU   1318 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277160 (LOC100277160), mRNA	NA	coding protein	psRNATarget
EU967125.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |||*||||||||||||||||*|| targets:1296   AGCAUGCAAUCAAGCGAUCUAGU   1318 Target Full Sequence	1.5	Zea mays clone 299609 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679137.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |*|*|||||||||||||||||*| targets:2210   AACAUGCAAUCAAGCGAUCUGAU   2232 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020551591.1	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |*|*|||||||||||||||||*| targets:2629   AACAUGCAAUCAAGCGAUCUGAU   2651 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008679136.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |*|*|||||||||||||||||*| targets:2650   AACAUGCAAUCAAGCGAUCUGAU   2672 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679135.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |*|*|||||||||||||||||*| targets:2746   AACAUGCAAUCAAGCGAUCUGAU   2768 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679134.2	ncRNA:23   UCGCACGUUAGUUCGCUAGACCA   1   |*|*|||||||||||||||||*| targets:2827   AACAUGCAAUCAAGCGAUCUGAU   2849 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X1, mRNA	NA	coding protein	psRNATarget