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BaseInfo

ncRNA ID novel_zma_miR7791
Species Zea mays
Class miRNA
Genome position Chr6:167164447-167164565 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 96 - CCAUAUGGAUUGGGGUAGAACCAA - 119
Stem-loop(if miRNA) --    -AU UU                GA         UAC  A UGGAGGAGAUUUUGA
  GGUU   U  CAAUCCAUAUGGAUUG  GGGGAUUGA   GG U               C
  ||||   |  ||||||||||||||||  |||||||||   || |               U
  CCAA   G  GUUAGGUAUACCUAAC  CCCCUAACU   CC C               U
AA    GAU GG                UC         --C  - CAAAGUUAGGGAUCA
Stem-loop sequence GGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGAGAUUUUGACUUACUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ061352.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:114   UUCGGUUCUACCCCAAUCCAUAUGG   138

0.0 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:361   UUCGGUUCUACCCCAAUCCAUAUGG   385

0.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:700   UUCGGUUCUACCCCAAUCCAUAUGG   724

0.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:842   UUCGGUUCUACCCCAAUCCAUAUGG   866

0.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959053.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:788   UUCGGUUCUACCCCAAUCCAUAUGG   812

0.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:788   UUCGGUUCUACCCCAAUCCAUAUGG   812

0.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:789   UUCGGUUCUACCCCAAUCCAUAUGG   813

0.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU961636.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:1045   UUCGGUUCUACCCCAAUCCAUAUGG   1069

0.0 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:861   UUCGGUUCUACCCCAAUCCAUAUGG   885

0.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:887   UUCGGUUCUACCCCAAUCCAUAUGG   911

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:1906   UUCGGUUCUACCCCAAUCCAUAUGG   1930

0.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:1906   UUCGGUUCUACCCCAAUCCAUAUGG   1930

0.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:1679   UUCGGUUCUACCCCAAUCCAUAUGG   1703

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||||||||||||||||
targets:893   UUCGGUUCUACCCCAAUCCAUAUGG   917

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*|||||||||||||||||
targets:790   UUCGGUUYUACCCCAAUCCAUAUGG   814

1.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU953075.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-|||||||||||||||=||||||
targets:925   UUCGGUUCUACCCCAAUCUAUAUGG   949

1.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
EU953075.1
ncRNA:24   AACCAAGAUGGGGUUAGGUAUACC   1
  *|***|||*|=|||||||||||||
targets:1007   AUCAAUCUCCUCCAAUCCAUAUGG   1030

2.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
EU956568.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-|||||||||=||||||||||||
targets:1546   UUCGGUUCUACCUCAAUCCAUAUGG   1570

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||||||=||||||=||||||
targets:754   UUCGGUUCUACUCCAAUCUAUAUGG   778

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
HI406643.1
ncRNA:24   AACCAA-GAUGGGGUUAGGUAUACC   1
  ||*|||-||||||||||||||||||
targets:14   UUCGUUUCUACCCCAAUCCAUAUGG   38

2.0 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
LQ238773.1
ncRNA:24   AACCAA-GAUGGGGUUAGGUAUACC   1
  ||*|||-||||||||||||||||||
targets:14   UUCGUUUCUACCCCAAUCCAUAUGG   38

2.0 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
JB167104.1
ncRNA:24   AACCAA-GAUGGGGUUAGGUAUACC   1
  ||*|||-||||||||||||||||||
targets:14   UUCGUUUCUACCCCAAUCCAUAUGG   38

2.0 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
EZ068230.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-|||||||*||||||||||||||
targets:36   UUCGGUUCUAGCCCAAUCCAUAUGG   60

1.0 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   AACC-AAGAUGGGGUUAGGUAUACC   1
  ||*|-||||||||||||||||||||
targets:855   UUCGAUUCUACCCCAAUCCAUAUGG   879

0.0 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-|||||||*||||||||||||||
targets:626   UUCGGUUCUAACCCAAUCCAUAUGG   650

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*|||||||||||||||||
targets:1614   UUCGGUUAUACCCCAAUCCAUAUGG   1638

1.0 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
EU951634.1
ncRNA:24   AACCAAGAUGGGGUUAGGUAUACC   1
  |||*|||||||||=|||||||||*
targets:720   UUGAUUCUACCCCGAUCCAUAUGA   743

2.5 Zea mays clone 985982 mRNA sequence NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AACCAA-GAUGGGGUUAGGUAUACC   1
  ||*|||-|||||||||||||||||*
targets:3036   UUCGUUUCUACCCCAAUCCAUAUGU   3060

3.0 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*||||||||||||||*||
targets:1347   UUCGGUUAUACCCCAAUCCAUAGGG   1371

2.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*||||||||||||||*||
targets:1391   UUCGGUUAUACCCCAAUCCAUAGGG   1415

2.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*||||||||||||||*||
targets:1409   UUCGGUUAUACCCCAAUCCAUAGGG   1433

2.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*||||||||||||||*||
targets:1423   UUCGGUUAUACCCCAAUCCAUAGGG   1447

2.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AA-CCAAGAUGGGGUUAGGUAUACC   1
  ||-||||*||||||||||||||*||
targets:1423   UUCGGUUAUACCCCAAUCCAUAGGG   1447

2.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
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