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BaseInfo

ncRNA ID novel_zma_miR7790
Species Zea mays
Class miRNA
Genome position Chr6:166177972-166178128 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 20
Mature sequence(if miRNA) 138 - UUGGUCAAACUUGAGAUGCU - 157
Stem-loop(if miRNA) --           G             -UAAUAAA    UAAC          A  ----------         UAU   AUUUU
  CAUCUCAAGUU GACCAAAAUUAUA        ACAA    AUUUAUGAUA CA          UAUAAAUAU   UAG     U
  ||||||||||| |||||||||||||        ||||    |||||||||| ||          |||||||||   |||
  GUAGAGUUCAA CUGGUUUUAAUAU        UGUU    UAAAUACUGU GU          AUAUUUAUA   AUC     C
UC           A             CUCUCUUA    --UC          A  UUAUCCGUAU         --U   AAUUA
Stem-loop sequence CAUCUCAAGUUGGACCAAAAUUAUAUAAUAAAACAAUAACAUUUAUGAUAACAUAUAAAUAUUAUUAGAUUUUUCAUUAACUAUAUAUUUAUAUAUGCCUAUUUGAUGUCAUAAAUCUUUGUAUUCUCUCUAUAAUUUUGGUCAAACUUGAGAUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU972903.1
ncRNA:20   UCGUAGAGUUCAAACUGGUU   1
  ||*|||||||||||||||=|
targets:1818   AGGAUCUCAAGUUUGACCGA   1837

2.5 Zea mays clone 389868 mRNA sequence NA coding protein psRNATarget