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BaseInfo

ncRNA ID novel_zma_miR7788
Species Zea mays
Class miRNA
Genome position Chr6:152652423-152652484 [+]
Reference genome RefGen_v4
Source SRR3341905
Length 24
Mature sequence(if miRNA) 39 - AUCCAGCGACUUAUAAAAAGAAAC - 62
Stem-loop(if miRNA) --                            A
  UUCUUUUUAUAAGUCGCUGGAUAGUGCA U
  ||||||||||||||||||||||||||||
  AAGAAAAAUAUUCAGCGACCUAUCACGU U
CA                            U
Stem-loop sequence UUCUUUUUAUAAGUCGCUGGAUAGUGCAAUUUUGCACUAUCCAGCGACUUAUAAAAAGAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544902.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:3160   GUUUCUUUUUAUUAGUCGCUGGAU   3183

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544903.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:3151   GUUUCUUUUUAUUAGUCGCUGGAU   3174

1.5 PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:2054   GUUUCUUUUUAUUAGUCGCUGGAU   2077

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:1987   GUUUCUUUUUAUUAGUCGCUGGAU   2010

1.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:1610   GUUUCUUUUUAUUAGUCGCUGGAU   1633

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
BT024153.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:200   GUUUCUUUUUAUUAGUCGCUGGAU   223

1.5 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
EU970288.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:1341   GUUUCUUUUUAUUAGUCGCUGGAU   1364

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
BT037092.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:1094   GUUUCUUUUUAUUAGUCGCUGGAU   1117

1.5 Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds NA coding protein psRNATarget
NM_001143050.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:1094   GUUUCUUUUUAUUAGUCGCUGGAU   1117

1.5 Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA NA coding protein psRNATarget
EZ061772.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:194   GUUUCUUUUUAUUAGUCGCUGGAU   217

1.5 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
EU973473.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:659   GUUUCUUUUUAUUAGUCGCUGGAU   682

1.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
JB166321.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:15   GUUUCUUUUUAUUAGUCGCUGGAU   38

1.5 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ237990.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:15   GUUUCUUUUUAUUAGUCGCUGGAU   38

1.5 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
HI405860.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:15   GUUUCUUUUUAUUAGUCGCUGGAU   38

1.5 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
HI403365.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1490 from Patent EP2074227 NA coding protein psRNATarget
LQ235495.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1490 from Patent EP2985353 NA coding protein psRNATarget
JB163826.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1490 from Patent EP2559767 NA coding protein psRNATarget
HI405828.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
JB166289.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
JB166291.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
HI405830.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
LQ237960.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
LQ237958.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:10   GUUUCUUUUUAUUAGUCGCUGGAU   33

1.5 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
HI403385.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1510 from Patent EP2074227 NA coding protein psRNATarget
JB163846.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1510 from Patent EP2559767 NA coding protein psRNATarget
HI403373.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1498 from Patent EP2074227 NA coding protein psRNATarget
LQ235515.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1510 from Patent EP2985353 NA coding protein psRNATarget
JB163834.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1498 from Patent EP2559767 NA coding protein psRNATarget
LQ235503.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||||||||||*|||||||||||
targets:5   GUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1498 from Patent EP2985353 NA coding protein psRNATarget
BT070166.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||=|||||||*|||||||||||
targets:774   GUUUUUUUUUAUUAGUCGCUGGAU   797

1.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  ||||=|||||||*|||||||||||
targets:774   GUUUUUUUUUAUUAGUCGCUGGAU   797

1.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
JB163774.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1438 from Patent EP2559767 NA coding protein psRNATarget
HI403313.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1438 from Patent EP2074227 NA coding protein psRNATarget
LQ235443.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1438 from Patent EP2985353 NA coding protein psRNATarget
HI403339.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1464 from Patent EP2074227 NA coding protein psRNATarget
LQ235469.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1464 from Patent EP2985353 NA coding protein psRNATarget
JB163800.1
ncRNA:24   CAAAGAAAAAUAUUCAGCGACCUA   1
  *|||||||||||*|||||||||||
targets:5   AUUUCUUUUUAUUAGUCGCUGGAU   28

1.5 Sequence 1464 from Patent EP2559767 NA coding protein psRNATarget
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