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BaseInfo

ncRNA ID	novel_zma_miR7784
Species	Zea mays
Class	miRNA
Genome position	Chr6:25092335-25092478 [+]
Reference genome	RefGen_v4
Source	SRR1745812
Length	24
Mature sequence(if miRNA)	121 - ACCAGAUCGCUUGAUUGCACGCUU - 144
Stem-loop(if miRNA)	--                                  A ---------      A   UU  AUA GAAAGGGGUUAA   GCGUGCAAUCAAGCGAUCUGGUGCAUCCAAUCAA C         CAUCCA CUG  AC   U            A   |||||||||||||||||||||||||||||||||| |         |||||| |||  ||   |   CGCACGUUAGUUCGCUAGACCACGUAGGUUAGUU G         GUAGGU GAC  UG   U            A UU                                  C CUAGACCAC      G   UU  -GA CAUGAAAAAAUG
Stem-loop sequence	GCGUGCAAUCAAGCGAUCUGGUGCAUCCAAUCAAACCAUCCAACUGUUACAUAUGAAAGGGGUUAAAAGUAAAAAAGUACUAGGUUUCAGGUGGAUGCACCAGAUCGCUUGAUUGGAUGCACCAGAUCGCUUGAUUGCACGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085458.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   |||||||||||||||||||||||| targets:1251   AAGCGUGCAAUCAAGCGAUCUGGU   1274 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0015G12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551490.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||||||||||||||||| targets:25   AAGCAUGCAAUCAAGCGAUCUGGU   48 Target Full Sequence	0.0	PREDICTED: Zea mays Galactose oxidase/kelch repeat superfamily protein (cl68462_1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008664963.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||||||||||||||||| targets:2671   AAGCAUGCAAUCAAGCGAUCUGGU   2694 Target Full Sequence	0.0	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103641627), mRNA	NA	coding protein	psRNATarget
HI403322.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*|||||||=||||||||||| targets:31   AAGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2074227	NA	coding protein	psRNATarget
JB163783.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*|||||||=||||||||||| targets:31   AAGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235452.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*|||||||=||||||||||| targets:31   AAGCAUGCAAUCGAGCGAUCUGGU   54 Target Full Sequence	1.5	Sequence 1447 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001177124.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*|||||||=||||||||||| targets:1282   AAGCAUGCAAUCGAGCGAUCUGGU   1305 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384630 (LOC100384630), mRNA	NA	coding protein	psRNATarget
BT083806.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*|||||||=||||||||||| targets:1282   AAGCAUGCAAUCGAGCGAUCUGGU   1305 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0041M07 mRNA, complete cds	NA	coding protein	psRNATarget
HI403430.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||*|||||||||||||| targets:31   AAGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235560.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||*|||||||||||||| targets:31   AAGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2985353	NA	coding protein	psRNATarget
JB163891.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||*|||||||||||||| targets:31   AAGCAUGCAUUCAAGCGAUCUGGU   54 Target Full Sequence	1.0	Sequence 1555 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001150809.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||||||||||||||*|| targets:1295   AAGCAUGCAAUCAAGCGAUCUAGU   1318 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277160 (LOC100277160), mRNA	NA	coding protein	psRNATarget
EU967125.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||||*||||||||||||||||*|| targets:1295   AAGCAUGCAAUCAAGCGAUCUAGU   1318 Target Full Sequence	1.5	Zea mays clone 299609 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166499.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2559767	NA	coding protein	psRNATarget
HI406038.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238168.1	ncRNA:20   CACGUUAGUUCGCUAGACCA   1   |||||||||=|||||||||| targets:1   GUGCAAUCAGGCGAUCUGGU   20 Target Full Sequence	1.5	Sequence 4163 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008679137.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||*|*|||||||||||||||||*| targets:2209   AAACAUGCAAUCAAGCGAUCUGAU   2232 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020551591.1	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||*|*|||||||||||||||||*| targets:2628   AAACAUGCAAUCAAGCGAUCUGAU   2651 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008679136.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||*|*|||||||||||||||||*| targets:2649   AAACAUGCAAUCAAGCGAUCUGAU   2672 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679135.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||*|*|||||||||||||||||*| targets:2745   AAACAUGCAAUCAAGCGAUCUGAU   2768 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679134.2	ncRNA:24   UUCGCACGUUAGUUCGCUAGACCA   1   ||*|*|||||||||||||||||*| targets:2826   AAACAUGCAAUCAAGCGAUCUGAU   2849 Target Full Sequence	1.5	PREDICTED: Zea mays LMBR1-like conserved region family protein (LOC100285043), transcript variant X1, mRNA	NA	coding protein	psRNATarget