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BaseInfo

ncRNA ID novel_zma_miR7777
Species Zea mays
Class miRNA
Genome position Chr5:20785925-20786008 [-]
Reference genome RefGen_v4
Source SRR3341905
Length 20
Mature sequence(if miRNA) 1 - UUGAGCCGCGUCAAUAUCUC - 20
Stem-loop(if miRNA) --            C          AG         AUA AU
  GGUAUUGGCGCG CUCAAUCCGA  GCGUGGCUG   G  U
  |||||||||||| ||||||||||  |||||||||   |  G
  CUAUAACUGCGC GAGUUAGGUU  UGUACCGAC   C  G
CU            C          CU         -GG GC
Stem-loop sequence GGUAUUGGCGCGCCUCAAUCCGAAGGCGUGGCUGAUAGAUUGGCGCGGCAGCCAUGUUCUUGGAUUGAGCCGCGUCAAUAUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948879.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:602   GAGAUAUUGGCGCGGCUCAA   621

1.5 Zea mays clone 388565 mRNA sequence NA coding protein psRNATarget
XM_020541749.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:358   GAGAUAUUGGCGCGGCUCAA   377

1.5 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103634376), mRNA NA coding protein psRNATarget
KJ726875.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:436   GAGAUAUUGGCGCGGCUCAA   455

1.5 Zea mays clone pUT3416 GRAS transcription factor (GRAS31) mRNA, partial cds NA coding protein psRNATarget
JX428447.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:496   GAGAUAUUGGCGCGGCUCAA   515

1.5 Zea mays subsp. mays clone pUT3041 GRAS32 GRAS type transcription factor mRNA, partial cds NA coding protein psRNATarget
EU974370.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:496   GAGAUAUUGGCGCGGCUCAA   515

1.5 Zea mays clone 447391 scarecrow-like 6 mRNA, complete cds NA coding protein psRNATarget
NM_001147253.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:552   GAGAUAUUGGCGCGGCUCAA   571

1.5 Zea mays scarecrow-like 6 (LOC100272800), mRNA NA coding protein psRNATarget
BT039466.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:552   GAGAUAUUGGCGCGGCUCAA   571

1.5 Zea mays full-length cDNA clone ZM_BFc0014N06 mRNA, complete cds NA coding protein psRNATarget
KJ727757.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:904   GAGAUAUUGGCGCGGCUCAA   923

1.5 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds NA coding protein psRNATarget
BT069447.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:505   GAGAUAUUGGCGCGGCUCAA   524

1.5 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds NA coding protein psRNATarget
KJ727939.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1105   GAGAUAUUGGCGCGGCUCAA   1124

1.5 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds NA coding protein psRNATarget
KJ726956.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1135   GAGAUAUUGGCGCGGCUCAA   1154

1.5 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds NA coding protein psRNATarget
BT018771.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:806   GAGAUAUUGGCGCGGCUCAA   825

1.5 Zea mays clone EL01N0525E08.d mRNA sequence NA coding protein psRNATarget
BT063504.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1198   GAGAUAUUGGCGCGGCUCAA   1217

1.5 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds NA coding protein psRNATarget
NM_001148573.2
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1163   GAGAUAUUGGCGCGGCUCAA   1182

1.5 Zea mays Scarecrow-like protein 6 (LOC100274201), mRNA NA coding protein psRNATarget
BT053927.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:918   GAGAUAUUGGCGCGGCUCAA   937

1.5 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds NA coding protein psRNATarget
NM_001174511.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1277   GAGAUAUUGGCGCGGCUCAA   1296

1.5 Zea mays GRAS transcription factor (GRAS79), mRNA NA coding protein psRNATarget
BT062028.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1277   GAGAUAUUGGCGCGGCUCAA   1296

1.5 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds NA coding protein psRNATarget
NM_001174946.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1371   GAGAUAUUGGCGCGGCUCAA   1390

1.5 Zea mays Scarecrow-like protein 6 (LOC100382187), mRNA NA coding protein psRNATarget
BT063450.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1371   GAGAUAUUGGCGCGGCUCAA   1390

1.5 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds NA coding protein psRNATarget
XM_020552649.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  |||||||||=||||||||||
targets:1379   GAGAUAUUGGCGCGGCUCAA   1398

1.5 PREDICTED: Zea mays uncharacterized LOC100279263 (LOC100279263), mRNA NA coding protein psRNATarget
EU964974.1
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  ||||||*||=||||||||||
targets:814   GAGAUACUGGCGCGGCUCAA   833

2.5 Zea mays clone 282885 mRNA sequence NA coding protein psRNATarget
XM_008651591.2
ncRNA:20   CUCUAUAACUGCGCCGAGUU   1
  ||||||*||=||||||||||
targets:1016   GAGAUACUGGCGCGGCUCAA   1035

2.5 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103630535), mRNA NA coding protein psRNATarget
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