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BaseInfo

ncRNA ID	novel_zma_miR7770
Species	Zea mays
Class	miRNA
Genome position	Chr5:96268390-96268509 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	97 - UUAGUCGGGUAAGUCUUGCUGGGU - 120
Stem-loop(if miRNA)	--        -       UU   CAA      G    UGAUAAU  AUG       CCCUU   UUAGUAAG CUUGCUU  CUG   AGAGGA UCUU       UG   AGCUUUU     G   |||||||| |||||||  |||   |||||| ||||       ||   |||||||   GGUCGUUC GAAUGGG  GAU   UUUUCU AGAG       AC   UCGAAAA     A UG        U       CU   UCC      G    UUCCCGU  -GA       CCCUU
Stem-loop sequence	UUAGUAAGCUUGCUUUUCUGCAAAGAGGAGUCUUUGAUAAUUGAUGAGCUUUUCCCUUGAUUCCCAAAAGCUAGCAUGCCCUUGAGAGUCUUUUCCUUAGUCGGGUAAGUCUUGCUGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083847.2	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=||||||||||||||||||||| targets:212   ACUCAGCAAGACUUACCCGACUAA   235 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0046G14 mRNA, complete cds	NA	coding protein	psRNATarget
BT069895.2	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=||||||||||||||||||||| targets:248   ACUCAGCAAGACUUACCCGACUAA   271 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0312I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065436.2	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=||||||||||||||||||||| targets:297   ACUCAGCAAGACUUACCCGACUAA   320 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0155E05 mRNA, complete cds	NA	coding protein	psRNATarget
BT085110.2	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=||||||||||||||||||||| targets:277   ACUCAGCAAGACUUACCCGACUAA   300 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0291A01 mRNA, complete cds	NA	coding protein	psRNATarget
BT054668.2	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=||||||||||||||=|||||| targets:471   ACUCAGCAAGACUUACCUGACUAA   494 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU944407.1	ncRNA:24   UGGGUCGUUCUGAAUGGGCUGAUU   1   ||=|||||||*||||||||||||| targets:653   ACUCAGCAAGUCUUACCCGACUAA   676 Target Full Sequence	1.0	Zea mays clone 217991 mRNA sequence	NA	coding protein	psRNATarget
EZ095594.1	ncRNA:24   UGGGU-CGUUCUGAAUGGGCUGAUU   1   ||==*-|||||*||||||||||||| targets:7   ACUUUCGCAAGUCUUACCCGACUAA   31 Target Full Sequence	3.0	TSA: Zea mays contig31247, mRNA sequence	NA	coding protein	psRNATarget
XM_008650464.2	ncRNA:24   UGGGU-CGUUCUGAAUGGGCUGAUU   1   ||==*-|||||*||||||||||||| targets:991   ACUUUCGCAAGUCUUACCCGACUAA   1015 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103629300 (LOC103629300), mRNA	NA	coding protein	psRNATarget