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BaseInfo

ncRNA ID	novel_zma_miR7768
Species	Zea mays
Class	miRNA
Genome position	Chr6:9892349-9892441 [+]
Reference genome	RefGen_v4
Source	SRR1745812
Length	24
Mature sequence(if miRNA)	70 - AAUCCCUUGGAAAAAUGAGGUUCC - 93
Stem-loop(if miRNA)	--   UC      C          CC      -   AAG       GA   AAC  CAUUUU CCAAGGGAUU  UAUUUU CCU   GGGAAAU  A   |||  |||||| ||||||||||  |||||| |||   |||||||   UUG  GUAAAA GGUUCCCUAA  AUAAAA GGG   CCCUUUA  C CC   GA      A          AA      A   --A       AU
Stem-loop sequence	AACUCCAUUUUCCCAAGGGAUUCCUAUUUUCCUAAGGGGAAAUGAACUAAUUUCCCAGGGAAAAAUAAAAAUCCCUUGGAAAAAUGAGGUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU950786.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |||||||||||||*|||||||||| targets:298   GGAACCUCAUUUUCCCAAGGGAUU   321 Target Full Sequence	1.5	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget
NM_001151019.2	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |||||||||||||||||||*|||| targets:828   GGAACCUCAUUUUUCCAAGCGAUU   851 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277469 (LOC100277469), mRNA	NA	coding protein	psRNATarget
EU968754.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |||||||||||||||||||*|||| targets:829   GGAACCUCAUUUUUCCAAGCGAUU   852 Target Full Sequence	1.5	Zea mays clone 323934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069551.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |||||||||||||||||||*|||| targets:241   GGAACCUCAUUUUUCCAAGUGAUU   264 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds	NA	coding protein	psRNATarget
EZ063546.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||||||||||||=|||||||| targets:198   GGCAACCUCAUUUUUCUAAGGGAUU   222 Target Full Sequence	1.5	TSA: Zea mays contig64668, mRNA sequence	NA	coding protein	psRNATarget
XM_008651270.2	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||=|||||||||||||||||| targets:3903   GGUAACUUCAUUUUUCCAAGGGAUU   3927 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651269.2	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||=|||||||||||||||||| targets:3946   GGUAACUUCAUUUUUCCAAGGGAUU   3970 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942190.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*|||||||=||||||||| targets:806   GGAACCACAUUUUUUCAAGGGAUU   829 Target Full Sequence	2.5	Zea mays clone 1477048 mRNA sequence	NA	coding protein	psRNATarget
BT066561.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*|||||||=||||||||| targets:1993   GGAACCACAUUUUUUCAAGGGAUU   2016 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175863.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*|||||||=||||||||| targets:1993   GGAACCACAUUUUUUCAAGGGAUU   2016 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383201 (gpm18), mRNA	NA	coding protein	psRNATarget
EZ069390.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-|=|=|||||||||||||||| targets:560   GGAAACUUUAUUUUUCCAAGGGAUU   584 Target Full Sequence	2.0	TSA: Zea mays contig05026, mRNA sequence	NA	coding protein	psRNATarget
AY104655.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   **|||=|||||||||||||||||| targets:969   AAAACUUCAUUUUUCCAAGGGAUU   992 Target Full Sequence	1.0	Zea mays PCO101521 mRNA sequence	NA	coding protein	psRNATarget
XM_008668801.2	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   **|||=|||||||||||||||||| targets:1017   AAAACUUCAUUUUUCCAAGGGAUU   1040 Target Full Sequence	1.0	PREDICTED: Zea mays 60S ribosomal protein L7-2 (pco101521(516)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT033439.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   **|||=|||||||||||||||||| targets:943   AAAACUUCAUUUUUCCAAGGGAUU   966 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0057A04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136802.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   **|||=|||||||||||||||||| targets:943   AAAACUUCAUUUUUCCAAGGGAUU   966 Target Full Sequence	1.0	Zea mays 60S ribosomal protein L7-2 (pco101521(516)), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |||||||==*|||||||||||||| targets:1696   GGAACCUUGAUUUUCCAAGGGAUU   1719 Target Full Sequence	3.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
AY105385.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *||||=*||||||||||||||||| targets:937   CGAACUCCAUUUUUCCAAGGGAUU   960 Target Full Sequence	2.0	Zea mays PCO152591 mRNA sequence	NA	coding protein	psRNATarget
BT087243.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *||||=*||||||||||||||||| targets:890   CGAACUCCAUUUUUCCAAGGGAUU   913 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0012J16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196637.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *||||=*||||||||||||||||| targets:890   CGAACUCCAUUUUUCCAAGGGAUU   913 Target Full Sequence	2.0	Zea mays uncharacterized LOC100502159 (LOC100502159), mRNA	NA	coding protein	psRNATarget
EU950348.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *||||=*||||||||||||||||| targets:889   AGAACUCCAUUUUUCCAAGGGAUU   912 Target Full Sequence	2.0	Zea mays clone 489779 mRNA sequence	NA	coding protein	psRNATarget
EU969579.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *|||=|||||||||*||||||||| targets:1558   AGAAUCUCAUUUUUACAAGGGAUU   1581 Target Full Sequence	1.5	Zea mays clone 332632 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151130.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *|||=|||||||||*||||||||| targets:1558   AGAAUCUCAUUUUUACAAGGGAUU   1581 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277618 (LOC100277618), mRNA	NA	coding protein	psRNATarget
BT036076.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*||||||*|||||||||| targets:797   GGAACCCCAUUUUCCCAAGGGAUU   820 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0094C03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547422.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*||||||*|||||||||| targets:2276   GGAACCCCAUUUUCCCAAGGGAUU   2299 Target Full Sequence	2.5	PREDICTED: Zea mays 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (LOC100193732), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   ||||||*||||||*|||||||||| targets:372   GGAACCCCAUUUUCCCAAGGGAUU   395 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU960755.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   *|||==*||||||||||||||||| targets:951   CGAAUUCCAUUUUUCCAAGGGAUU   974 Target Full Sequence	2.0	Zea mays clone 228324 mRNA sequence	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   **||||*|||||||=||||||||| targets:1414   UAAACCCCAUUUUUUCAAGGGAUU   1437 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
XM_020545610.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020545608.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545617.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020545609.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545619.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020545607.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545616.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020545606.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545620.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020545618.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020545615.1	ncRNA:24   CCUU-GGAGUAAAAAGGUUCCCUAA   1   ||||-=||=||||||||||*||||| targets:243   GGAAAUCUUAUUUUUCCAAAGGAUU   267 Target Full Sequence	2.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X10, mRNA	NA	coding protein	psRNATarget
BT069727.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||**||||||||||||||||| targets:1834   GGUAACACCAUUUUUCCAAGGGAUU   1858 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0212A11 mRNA, complete cds	NA	coding protein	psRNATarget
BT033849.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||**||||||||||||||||| targets:1845   GGUAACACCAUUUUUCCAAGGGAUU   1869 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0124J21 mRNA, complete cds	NA	coding protein	psRNATarget
BT066363.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||**||||||||||||||||| targets:1866   GGUAACACCAUUUUUCCAAGGGAUU   1890 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0028E18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657216.2	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-|||**||||||||||||||||| targets:1927   GGUAACACCAUUUUUCCAAGGGAUU   1951 Target Full Sequence	2.0	PREDICTED: Zea mays gamma-tubulin 1 (tubg1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT053974.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |*||||||||*|||||||||*||| targets:2046   GCAACCUCAUGUUUCCAAGGAAUU   2069 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0087P22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152311.1	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |*||||||||*|||||||||*||| targets:2046   GCAACCUCAUGUUUCCAAGGAAUU   2069 Target Full Sequence	2.5	Zea mays Glucose-6-phosphate 1-dehydrogenase (gpm175), mRNA	NA	coding protein	psRNATarget
XM_008663585.2	ncRNA:24   CCUUGGAGUAAAAAGGUUCCCUAA   1   |*||||||||*|||||||||*||| targets:2321   GCAACCUCAUGUUUCCAAGGAAUU   2344 Target Full Sequence	2.5	PREDICTED: Zea mays Glucose-6-phosphate 1-dehydrogenase (gpm175), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067684.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-||*=|||||||||||||*|||| targets:1266   GGCAAAUUCAUUUUUCCAAGUGAUU   1290 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0127D15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176228.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-||*=|||||||||||||*|||| targets:1266   GGCAAAUUCAUUUUUCCAAGUGAUU   1290 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383580 (LOC100383580), mRNA	NA	coding protein	psRNATarget
EU963479.1	ncRNA:24   CC-UUGGAGUAAAAAGGUUCCCUAA   1   ||-||*=|||||||||||||*|||| targets:1328   GGCAAAUUCAUUUUUCCAAGUGAUU   1352 Target Full Sequence	2.5	Zea mays clone 263101 mRNA sequence	NA	coding protein	psRNATarget