Search result

BaseInfo

ncRNA ID	novel_zma_miR7765
Species	Zea mays
Class	miRNA
Genome position	Chr5:39751836-39751893 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	1 - AACACUCGACAAAGAACCUAAGCC - 24
Stem-loop(if miRNA)	--        A      A C  AG  GGU   AACACUCG CAAAGA C UA  CC   G   |||||||| |||||| | ||  ||   UUGUGAGC GUUUCU G GU  GG   C UA        C      C U  CU  ACC
Stem-loop sequence	AACACUCGACAAAGAACCUAAGCCGGUGCCCAGGUCUGUGCUCUUUGCCGAGUGUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240695.1	ncRNA:22   GAAUCCAAGAAACAGCUCACAA   1   |||||||||||||*|||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	1.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:22   GAAUCCAAGAAACAGCUCACAA   1   |||||||||||||*|||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	1.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:22   GAAUCCAAGAAACAGCUCACAA   1   |||||||||||||*|||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	1.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:38   GGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:38   GGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:38   GGUAUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.5	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:175   GGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:175   GGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=*|||||||||||*|||||||* targets:175   GGUAUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****||*|||||||||||||||| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****||*|||||||||||||||| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****||*|||||||||||||||| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****||*|||||||||||||||| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****|*||||||||||||||||| targets:427   CAAAAAAGUUCUUUGUCGAGUGUU   450 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   *****|*||||||||||||||||| targets:679   CAAAAAAGUUCUUUGUCGAGUGUU   702 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ242089.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=**||*|||||||*|||||||| targets:17   GGUAAAGCUUCUUUGACGAGUGUU   40 Target Full Sequence	2.5	Sequence 8084 from Patent EP2985353	NA	coding protein	psRNATarget
JB170420.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=**||*|||||||*|||||||| targets:17   GGUAAAGCUUCUUUGACGAGUGUU   40 Target Full Sequence	2.5	Sequence 8084 from Patent EP2559767	NA	coding protein	psRNATarget
HI409959.1	ncRNA:24   CCGAAUCCAAGAAACAGCUCACAA   1   ||=**||*|||||||*|||||||| targets:17   GGUAAAGCUUCUUUGACGAGUGUU   40 Target Full Sequence	2.5	Sequence 8084 from Patent EP2074227	NA	coding protein	psRNATarget