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BaseInfo

ncRNA ID	novel_zma_miR7763
Species	Zea mays
Class	miRNA
Genome position	Chr4:30738344-30738421 [+]
Reference genome	RefGen_v4
Source	SRR3341905
Length	24
Mature sequence(if miRNA)	1 - AUAUGGAUUGGAGAGGAUUGAUAC - 24
Stem-loop(if miRNA)	--          GA A  -A     ACGGA   U A   AU   AUAUGGAUUG  G GG  UUGAU     CUA G AAG  U   ||||||||||  | ||  |||||     ||| | |||  U   UAUACCUAAC  C CC  AAUUA     GAU C UUC  U GA          UC C  AA     ---GG   - A   AA
Stem-loop sequence	AUAUGGAUUGGAGAGGAUUGAUACGGACUAUGAAAGAUUUUAACUUACUAGGGAUUAAAACCCCCUCAAUCCAUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:298   GUAUCAAUCCCCUCCAAUCCAUAU   321 Target Full Sequence	1.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:1627   GUAUCAAUCCCCUCCAAUCCAUAU   1650 Target Full Sequence	1.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:1977   GUAUCAAUCCCCUCCAAUCCAUAU   2000 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:1977   GUAUCAAUCCCCUCCAAUCCAUAU   2000 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:19   GUAUCAAUCCCCUCCAAUCCAUAU   42 Target Full Sequence	1.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||||||||||| targets:696   GUAUCAAUCCCCUCCAAUCCAUAU   719 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:973   GUAUCAAUCCCCUUCAAUCCAUAU   996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:1494   GUAUCAAUCCCCUUCAAUCCAUAU   1517 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:1494   GUAUCAAUCCCCUUCAAUCCAUAU   1517 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:1480   GUAUCAAUCCCCUUCAAUCCAUAU   1503 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:1462   GUAUCAAUCCCCUUCAAUCCAUAU   1485 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||=|||||||||| targets:1418   GUAUCAAUCCCCUUCAAUCCAUAU   1441 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||=|||||||| targets:1082   GUAUCAAUCCCCUCCGAUCCAUAU   1105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||=|||||*||||||||||||| targets:1195   GUAUUAAUCCCCUCCAAUCCAUAU   1218 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*||||=|||||||| targets:1044   GUAUCAAUCCCCUCCGAUCCAUAU   1067 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||=|||||*||||||||||||| targets:1157   GUAUUAAUCCCCUCCAAUCCAUAU   1180 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   |||||||||=*||||||||||||| targets:1005   GUAUCAAUCUCCUCCAAUCCAUAU   1028 Target Full Sequence	2.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*=|||||||||||| targets:833   GUAUCAAUCCCUUCCAAUCCAUAU   856 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ||||||||||*|||=||||||||| targets:781   GUAUCAAUCCCCUCUAAUCCAUAU   804 Target Full Sequence	2.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:914   AUAUCAAUCCCCUCCAAUCCAUAU   937 Target Full Sequence	1.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:842   AUAUCAAUCCCCUCCAAUCCAUAU   865 Target Full Sequence	1.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:841   AUAUCAAUCCCCUCCAAUCCAUAU   864 Target Full Sequence	1.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:841   AUAUCAAUCCCCUCCAAUCCAUAU   864 Target Full Sequence	1.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:843   AUAUCAAUCCCCUCCAAUCCAUAU   866 Target Full Sequence	1.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:895   AUAUCAAUCCCCUCCAAUCCAUAU   918 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|||||||||*||||||||||||| targets:442   AUAUCAAUCCCCUCCAAUCCAUAU   465 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   |||||||||**||||||||||||| targets:885   GUAUCAAUCACCUCCAAUCCAUAU   908 Target Full Sequence	2.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   |||||||||**||||||||||||| targets:885   GUAUCAAUCACCUCCAAUCCAUAU   908 Target Full Sequence	2.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ****=||||||||||||||||||| targets:1356   CACCUAAUCCUCUCCAAUCCAUAU   1379 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:895   CACUCAAUCCACUCCAAUCCAUAU   918 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:866   CACUCAAUCCACUCCAAUCCAUAU   889 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:814   CACUCAAUCCACUCCAAUCCAUAU   837 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:814   CACUCAAUCCACUCCAAUCCAUAU   837 Target Full Sequence	1.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
JB167414.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:8   CACUCAAUCCACUCCAAUCCAUAU   31 Target Full Sequence	1.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:8   CACUCAAUCCACUCCAAUCCAUAU   31 Target Full Sequence	1.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|||||||*||||||||||||| targets:8   CACUCAAUCCACUCCAAUCCAUAU   31 Target Full Sequence	1.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***||||||=*||||||||||||| targets:332   CACUCAAUCUCCUCCAAUCCAUAU   355 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU957719.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|=|||||*|||=||||||||| targets:2128   CACUUAAUCCCCUCUAAUCCAUAU   2151 Target Full Sequence	2.5	Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154659.2	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   ***|=|||||*|||=||||||||| targets:2127   CACUUAAUCCCCUCUAAUCCAUAU   2150 Target Full Sequence	2.5	Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA	NA	coding protein	psRNATarget
EU944315.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|*|||||||*||*|||||||||| targets:171   UUUUCAAUCCACUACAAUCCAUAU   194 Target Full Sequence	2.5	Zea mays clone 210152 mRNA sequence	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|*|||||||**|||||||||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|*|||||||**|||||||||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   CAUAGUUAGGAGAGGUUAGGUAUA   1   *|*|||||||**|||||||||||| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget